Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007101 (mglC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007101 showshow history
Names
mglC JW2135 ECK2141 mglP b2148
Product
membrane component of an ABC superfamily methyl-galactoside transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2236743 2237753 1011 337
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved IPR030158 (IPR030158 Galactoside transport system permease protein MglC) Jul 2018
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mglC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym mglP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2141 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2135 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2148 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily methyl-galactoside transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2008
Automated Process Approved alternate product name methyl-galactoside transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved alternate product name methyl-galactoside transport and galactose taxis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name methyl-galactoside transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR030158 Galactoside transport system permease protein MglC Protein Sequence Similarity - InterPro Domain: IPR030158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.119 (transport; substrate; methylgalactoside/galactose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10594 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007101 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P23200 Published Annotation - Swiss-Prot Accession Number: P23200 Jan 2005
Automated Process Approved db xref GeneID:949039 Published Annotation - Entrez Gene Database ID: 949039
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1788471 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note methyl-galactoside transport and galactose taxis; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75209.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003368 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001915 mglC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002048 mglC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002890 mglC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002214 mglC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002966 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001139 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002994 mglC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003710 mglC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007981 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018379 mglC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001146 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003606 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302960 mglC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002467 mglC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001346 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005104 mglC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002205 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009190 mglC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002099 mglC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002178 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007123 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006575 mglC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005471 mglC pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078818 mglC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002481 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002810 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009766 mglC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005765 mglC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002439 mglC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006879 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000508 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006618 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005145 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006586 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008637 mglC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008121 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005811 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005905 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009620 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007188 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009359 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008867 mglC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009236 mglC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027125 mglC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004977 mglC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006956 mglC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002725 mglC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002020 mglC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002214 mglC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002630 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002574 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002525 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002508 mglC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002455 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002294 mglC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133048 mglC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000247 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002428 mglC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000987 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002111 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002594 mglC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000928 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005601 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001913 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002030 mglC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001866 mglC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002166 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002611 mglC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001536 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010376 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001271 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289599 mglC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005784 mglC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006503 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000735 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002573 mglC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006802 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006975 mglC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006633 mglC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004200 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006785 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006085 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006541 mglC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004184 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005933 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006741 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007522 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000663 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000663 mglC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000834 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006973 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006423 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006506 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005729 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109934 mglC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082380 mglC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002699 mglC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096981 mglC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007088 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004594 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005473 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004247 CDS
Person Approved Go view Shigella boydii 227 ADV-0002416 mglC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006220 mglC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003605 mglC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002465 mglC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073491 mglC CDS
Person Approved Go view Shigella flexneri 301 ABT-0256051 mglC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002388 mglC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002414 mglC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001199 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001400 VC1328 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001139 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008107 mglC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002239 mglC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001323 mglC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002559 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237581 mglC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007135 mglC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000979 mglC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005637 mglC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001794 mglC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120279 mglC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005643 mglC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004404 mglC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002448 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009055 mglC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004940 mglC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032393 mglC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007796 mglC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002970 mglC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001757 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006605 mglC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006448 mglC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001596 mglC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001938 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003041 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016739 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003063 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20649mutantTn5 InsertionRequest the StrainABE-0007101mglCmglC::Tn5KAN-2 at position 557 in Plus orientation ,- pKD460Blattner Laboratory
FB20650mutantTn5 InsertionRequest the StrainABE-0007101mglCmglC::Tn5KAN-2 at position 557 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2231743 to 2242753
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007086cddCDSforward22318442232728Downstream
ABE-0285495repeat_regionforward22327362232769Downstream
ABE-0007091sanACDSforward22328782233597Downstream
ABE-0007093yeiSCDSforward22336002233839Downstream
ABE-0007096preTCDSforward22340332235271Downstream
ABE-0007098preACDSforward22352652236500Downstream
ABE-0285496repeat_regionforward22365342236683Downstream
ABE-0007101mglCCDScomplement22367432237753Matches
ABE-0007103mglACDScomplement22377692239289Upstream
ABE-0007108mglBCDScomplement22393502240348Upstream
ABE-0007110galSCDScomplement22406282241668Upstream
ABE-0007115yeiBCDScomplement22418102242967Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.