Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007117 (folE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007117 showshow history
Names
folE JW2140 ECK2146 b2153
Product
GTP cyclohydrolase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2242984 2243652 669 223
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000775
EnteroFam0007117: Trusted threshold=631.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001474 (IPR001474 GTP cyclohydrolase I) Apr 2008
Automated Process Approved IPR020602 (IPR020602 GTP cyclohydrolase I domain) Jul 2018
Automated Process Approved PF01227 (PF01227 GTP cyclohydrolase I) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046654 tetrahydrofolate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019438 aromatic compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003934 GTP cyclohydrolase I activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name folE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2140 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2146 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2153 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GTP cyclohydrolase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name GTP cyclohydrolase I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007117: Trusted threshold=631.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000775
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001474 GTP cyclohydrolase I Protein Sequence Similarity - InterPro Domain: IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020602 GTP cyclohydrolase I domain Protein Sequence Similarity - InterPro Domain: IPR020602
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01227 GTP cyclohydrolase I Protein Sequence Similarity - PFAM Model Name: PF01227
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.4.16 Published Annotation - Swiss-Prot Accession Number: P0A6T5 Feb 2006
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007117 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11375 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788476 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6T5 Published Annotation - Swiss-Prot Accession Number: P0A6T5 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6T5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949040 Published Annotation - Entrez Gene Database ID: 949040
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75214.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046654 tetrahydrofolate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019438 aromatic compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003934 GTP cyclohydrolase I activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000775 folE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001493 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000318 folE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000282 folE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000366 folE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000398 folE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000800 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000284 CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104244 folE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002971 folE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001134 folE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002999 folE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003715 folE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007259 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019850 folE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001731 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003611 folE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302981 folE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002473 folE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001341 folE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003412 folE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005109 folE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002211 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009185 folE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002104 folE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002173 folE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007117 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006580 folE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005466 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078824 folE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002486 folE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002815 folE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009771 folE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005770 folE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002444 folE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006885 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000514 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006624 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005151 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006592 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008643 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008127 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005805 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005911 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009626 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007194 folE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009365 folE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008861 folE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009242 folE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027130 folE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004982 folE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006961 folE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002730 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002024 folE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002219 folE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002636 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002580 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002531 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002513 folE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002460 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002299 folE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133053 folE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000241 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002434 folE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000982 folE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002106 folE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002599 folE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000933 folE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007109 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001918 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002035 folE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001871 folE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002161 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002616 folE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001531 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010381 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001266 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289605 folE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005789 folE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062980 folE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001512 folE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001886 folE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000124 folE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006478 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140283 folE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006508 folE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000730 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002579 folE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006807 folE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006996 folE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006652 folE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004195 folE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006790 folE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006090 folE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006546 folE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004189 folE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005938 folE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006747 folE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007517 folE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000658 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000658 folE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000826 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006978 folE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006428 folE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006511 folE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005734 folE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0109948 folE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082375 folE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002707 folE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097004 folE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007083 folE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004589 folE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005478 folE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004252 folE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267902 folE CDS
Person Approved Go view Shigella boydii 227 ADV-0002411 folE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006210 folE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003543 folE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002452 folE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073496 folE CDS
Person Approved Go view Shigella flexneri 301 ABT-0088505 folE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002393 folE CDS
Person Approved Go view Shigella sonnei 046 ADD-0002419 folE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001204 folE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003506 VCA0616 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000487 folE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002647 folE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001134 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008126 folE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002244 folE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001318 folE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002564 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237565 folE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007130 folE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000973 folE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005632 folE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001790 folE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120258 folE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005638 folE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004409 folE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002452 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009050 folE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004945 folE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032397 folE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007801 folE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002976 folE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001763 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006610 folE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006453 folE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001592 folE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001932 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003047 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016770 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003058 folE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2237984 to 2248652
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007103mglACDScomplement22377692239289Downstream
ABE-0007108mglBCDScomplement22393502240348Downstream
ABE-0007110galSCDScomplement22406282241668Downstream
ABE-0007115yeiBCDScomplement22418102242967Downstream
ABE-0007117folECDScomplement22429842243652Matches
ABE-0007124yeiGCDSforward22439102244746Upstream
ABE-0007126cirACDScomplement22447782246769Upstream
ABE-0007131lysPCDScomplement22470632248532Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.