Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007165 (psuG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007165 showshow history
Names
psuG pscG JW2152 ECK2158 yeiN b2165
Product
pseudouridine 5'-phosphate glycosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2257429 2258367 939 313
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007342 (IPR007342 Pseudouridine-5'-phosphate glycosidase) Apr 2008
Automated Process Approved IPR022830 (IPR022830 Indigoidine synthase A-like) Jul 2018
Automated Process Approved PF04227 (PF04227 Indigoidine synthase A like protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO molecular function GO:0016798 hydrolase activity, acting on glycosyl bonds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007342, IPR022830
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name psuG Published Annotation in EcoGene - EG Number: EG12033
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Approved synonym JW2152 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2158 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yeiN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym pscG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2165 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product pseudouridine 5'-phosphate glycosidase Experimental - PubMed ID: 18591240
Reference: Escherichia coli K-12 		Mar 2009
Protein Family
Automated Process Approved protein family IPR007342 Pseudouridine-5'-phosphate glycosidase Protein Sequence Similarity - InterPro Domain: IPR007342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022830 Indigoidine synthase A-like Protein Sequence Similarity - InterPro Domain: IPR022830
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04227 Indigoidine synthase A like protein Protein Sequence Similarity - PFAM Model Name: PF04227
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.-.- Published Annotation - Database Name: EC2GO: GO:0016798
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33025 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007165 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946699 Published Annotation - Entrez Gene Database ID: 946699
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788490 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33025 Published Annotation - Swiss-Prot Accession Number: P33025 Jan 2005
Automated Process Approved function enzyme; pseudouridine catabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75226.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO molecular function GO:0016798 hydrolase activity, acting on glycosyl bonds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007342, IPR022830
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004335 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003558 psuG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003769 psuG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004326 psuG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003313 psuG CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003009 psuG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003728 psuG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004464 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016084 indA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004167 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003402 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005121 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002223 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009173 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002114 yeiN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002161 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007102 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006592 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005453 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081887 psuG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002500 psuG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002827 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009783 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005782 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002456 yeiN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006898 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000527 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006637 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005164 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006605 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010723 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008141 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005792 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010750 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007209 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009379 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010571 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009255 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027142 yeiN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0004997 psuG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006975 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002741 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002036 yeiN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002231 yeiN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002652 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002596 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002547 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0002524 pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176676 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002473 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002311 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133065 yeiN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000228 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002446 yeiN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000012 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146702 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002397 yeiN CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006197 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003529 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073509 yeiN CDS
Person Approved Go view Shigella flexneri 301 ABT-0088515 yeiN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002405 yeiN CDS
Person Approved Go view Shigella sonnei 046 ADD-0002431 yeiN CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003705 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001919 psuG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001833 psuG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2252429 to 2263367
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007149yeiICDSforward22517002252788Downstream
ABE-0285497repeat_regionforward22527962252886Downstream
ABE-0007152nupXCDScomplement22528952254145Downstream
ABE-0007156rihBCDScomplement22542452255186Downstream
ABE-0007160yeiLCDSforward22553552256014Downstream
ABE-0285498repeat_regionforward22560382256074Downstream
ABE-0007163psuTCDScomplement22560852257335Downstream
ABE-0007165psuGCDScomplement22574292258367Matches
ABE-0007168psuKCDScomplement22583552259296Overlaps Upstream
ABE-0007172fruACDScomplement22597192261410Upstream
ABE-0007174fruKCDScomplement22614272262365Upstream
ABE-0007180fruBCDScomplement22623652263495Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.