Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007196 (lpxT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007196 showshow history
Names
lpxT yeiU JW2162 ECK2168 b2174
Product
lipid A 1-phosphotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2268854 2269567 714 238
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000785
EnteroFam0007196: Trusted threshold=542.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000326 (IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase) Apr 2008
Automated Process Approved IPR036938 (IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily) Jul 2018
Automated Process Approved PF01569 (PF01569 PAP2 superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lpxT Experimental - PubMed ID: 18047581
Reference: Escherichia coli 		Apr 2009
Automated Process Approved synonym yeiU Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2162 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2168 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2174 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product lipid A 1-phosphotransferase Experimental - PubMed ID: 18047581
Reference: Escherichia coli 		Apr 2009
Automated Process Approved alternate product name lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name undecaprenyl pyrophosphate phosphatase Experimental - PubMed ID: 15778224
Reference: Escherichia coli 		Apr 2009
Protein Family
Person Approved EnteroFam EnteroFam0007196: Trusted threshold=542.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000785
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Protein Sequence Similarity - InterPro Domain: IPR000326
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01569 PAP2 superfamily Protein Sequence Similarity - PFAM Model Name: PF01569
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Protein Sequence Similarity - InterPro Domain: IPR036938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4 (transport) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007196 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082062 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946693 Published Annotation - Entrez Gene Database ID: 946693
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76445 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14075 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76445 Published Annotation - Swiss-Prot Accession Number: P76445 Jan 2005
Automated Process Approved protein id AAC75235.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000785 lpxT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002477 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001720 lpxT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001933 lpxT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001644 lpxT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001909 lpxT CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002993 yeiU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001089 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003021 yeiU CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020334 lpxT CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003634 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303049 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002489 yeiU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001324 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003387 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005132 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002233 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009162 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002123 yeiU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002150 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007091 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006605 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005442 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078847 lpxT CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002512 yeiU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002839 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006459 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005795 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002466 yeiU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006908 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000538 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006649 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005175 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006616 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007692 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008152 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005781 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007221 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009390 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010348 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009266 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027151 yeiU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005008 lpxT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006985 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002751 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002044 yeiU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002241 yeiU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002662 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002606 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002557 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002534 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176689 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002483 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002322 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133074 yeiU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000217 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002458 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002340 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002616 yeiU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000953 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007140 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001938 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002055 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001894 yeiU CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002135 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002639 yeiU CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001508 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010398 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001248 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289627 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005809 yeiU CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063003 yeiU CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001521 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000709 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000101 yeiU CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006451 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143415 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006531 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000704 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002604 yeiU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006829 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007074 yeiU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006727 yeiU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006309 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006812 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006113 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006567 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004210 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005960 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006770 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007495 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000638 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000638 yeiU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000797 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007001 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006449 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006532 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005754 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110007 yeiU CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082355 yeiU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002739 yeiU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097062 yeiU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007059 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004567 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005501 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002505 CDS
Person Approved Go view Shigella boydii 227 ADV-0002385 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006181 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006992 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001020 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073521 yeiU CDS
Person Approved Go view Shigella flexneri 301 ABT-0088526 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002418 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002440 yeiU CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005646 yeiU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001248 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004332 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001237 yeiU CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003485 yeiU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001155 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237398 yeiU CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005613 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001211 yeiU CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005381 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002105 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119467 yeiU CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006140 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004654 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002573 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005311 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005203 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032648 yeiU CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005351 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003244 yeiU CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002902 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006403 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006692 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001382 yeiU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001663 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003303 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016858 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003039 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2263854 to 2274567
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007184setBCDSforward22638632265044Upstream
ABE-0285016yeiWCDScomplement22650412265295Upstream
ABE-0007187yeiPCDSforward22654502266022Upstream
ABE-0007191yeiQCDSforward22662452267711Upstream
ABE-0007194yeiRCDSforward22678292268815Upstream
ABE-0007196lpxTCDSforward22688542269567Matches
ABE-0007200mepSCDSforward22699792270545Downstream
ABE-0007203pdeNCDSforward22707262272282Downstream
ABE-0007206yejACDSforward22723642274178Downstream
ABE-0007208yejBCDSforward22741792275273Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.