Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007275 (ccmC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007275 showshow history
Names
ccmC yejU yejT JW2187 ECK2191 b2199
Product
membrane component of an ABC superfamily heme exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2295583 2296320 738 246
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002541 (IPR002541 Cytochrome c assembly protein) Apr 2008
Automated Process Approved IPR003557 (IPR003557 Cytochrome c-type biogenesis protein CcmC) Apr 2008
Automated Process Approved PF01578 (PF01578 Cytochrome C assembly protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015886 heme transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008535 respiratory chain complex IV assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006461 (DEPRECATED) protein complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002541
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015232 heme transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2191 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2187 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yejT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yejU Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2199 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily heme exporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name heme exporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name heme exporter protein C Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name heme export protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR003557 Cytochrome c-type biogenesis protein CcmC Protein Sequence Similarity - InterPro Domain: IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01578 Cytochrome C assembly protein Protein Sequence Similarity - PFAM Model Name: PF01578
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002541 Cytochrome c assembly protein Protein Sequence Similarity - InterPro Domain: IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.85 (transport; substrate; heme) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12057 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007275 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABM1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABM1 Published Annotation - Swiss-Prot Accession Number: P0ABM1 Jan 2006
Automated Process Approved db xref GeneID:946703 Published Annotation - Entrez Gene Database ID: 946703
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788527 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note heme exporter protein C; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0017004 - cytochrome complex assembly; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75259.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015886 heme transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008535 respiratory chain complex IV assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006461 (DEPRECATED) protein complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002541
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002541
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015232 heme transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003557
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002754 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000120 ccmC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001169 ccmC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002165 ccmC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001871 ccmC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003127 ccmC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000949 ccmC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003043 ccmC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003776 ccmC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303479 ccmC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002641 ccmC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001191 ccmC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003345 ccmC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005159 ccmC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009106 ccmC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002143 ccmC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002126 ccmC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007059 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006631 ccmC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005416 CcmC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078873 ccmC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002553 ccmC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002864 ccmC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006484 ccmC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005821 ccmC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002489 ccmC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006933 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000562 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006673 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005199 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006641 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007717 ccmC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008176 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005756 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005961 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006896 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007245 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010252 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010123 ccmC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007418 ccmC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027174 ccmC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005035 ccmC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007010 ccmC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002772 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002067 ccmC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002265 ccmC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002747 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002650 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002583 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002576 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176715 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002508 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002346 ccmC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133097 ccmC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000193 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002484 ccmC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002486 ccmC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003580 ccmC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002085 ccmC CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002049 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001690 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002028 ccmC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001990 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002776 ccmC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001368 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010537 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285824 ccmC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005918 ccmC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062143 ccmC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001038 ccmC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000489 ccmC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002120 ccmC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007394 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003691 ccmC CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002640 ccmC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004360 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002327 ccmC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263809 ccmC CDS
Person Approved Go view Shigella boydii 227 ADV-0002342 ccmC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006139 ccmC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006950 ccmC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000992 ccmC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073546 ccmC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088549 ccmC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002441 ccmC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002470 ccmC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002131 VC2055 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001769 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003774 ccmC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000704 ccmC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001051 ccmC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001094 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240148 ccmC2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004498 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002540 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008354 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000584 ccmC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124462 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004218 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005437 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002332 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006268 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005560 ccmC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031257 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007316 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002657 ccmC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002424 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005703 ccmC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005355 ccmC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002735 ccmC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003273 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001762 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015062 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003437 ccmC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20688mutantTn5 InsertionRequest the StrainABE-0007275ccmCccmC::Tn5KAN-2 at position 390 in Plus orientation ,+ pKD460Blattner Laboratory
FB20689mutantTn5 InsertionRequest the StrainABE-0007275ccmCccmC::Tn5KAN-2 at position 390 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2290583 to 2301320
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007259narPCDSforward22905002291147Downstream
ABE-0285501repeat_regionforward22911532291351Downstream
ABE-0007262ccmHCDScomplement22913582292410Downstream
ABE-0007264ccmGCDScomplement22924072292964Downstream
ABE-0007269ccmFCDScomplement22929612294904Downstream
ABE-0007271ccmECDScomplement22949012295380Downstream
ABE-0007273ccmDCDScomplement22953772295586Overlaps Downstream
ABE-0007275ccmCCDScomplement22955832296320Matches
ABE-0007277ccmBCDScomplement22963622297024Upstream
ABE-0007279ccmACDScomplement22970212297644Upstream
ABE-0007281napCCDScomplement22976572298259Upstream
ABE-0007283napBCDScomplement22982692298718Upstream
ABE-0007285napHCDScomplement22987152299578Upstream
ABE-0007287napGCDScomplement22995652300260Upstream
ABE-0007289napACDScomplement23002672302753Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.