Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007279 (ccmA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007279 showshow history
Names
ccmA yejW JW5366 ECK2193 b2201
Product
ATP-binding component of an ABC superfamily heme exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2297021 2297644 624 208
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR005895 (IPR005895 ABC transporter, haem export, CcmA) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2193 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5366 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yejW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2201 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily heme exporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name ATP binding protein of heme exporter A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name heme export protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name heme exporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005895 ABC transporter, haem export, CcmA Protein Sequence Similarity - InterPro Domain: IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.3.41 Published Annotation - Swiss-Prot Accession Number: P33931 Feb 2006
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.85 (transport; substrate; heme) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12059 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946714 Published Annotation - Entrez Gene Database ID: 946714
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P33931 Published Annotation - Swiss-Prot Accession Number: P33931 Jan 2005
Automated Process Approved db xref GI:87082064 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33931 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007279 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP binding protein of heme exporter A; ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0017004 - cytochrome complex assembly; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75261.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002752 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000113 ccmA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001398 ccmA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002166 ccmA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001690 ccmA CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000947 ccmA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003045 ccmA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003778 ccmA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303485 ccmA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002643 ccmA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001189 ccmA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003343 ccmA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005161 ccmA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002260 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009104 ccmA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002145 ccmA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002124 ccmA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007057 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006633 ccmA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005414 CcmA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078875 ccmA CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002555 ccmA pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002866 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006486 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005823 ccmA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002491 ccmA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006935 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000564 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006675 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005201 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006643 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007719 ccmA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008178 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005754 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005963 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006898 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007247 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010254 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010125 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007420 ccmA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027176 ccmA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005037 ccmA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007012 ccmA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002774 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002069 ccmA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002267 ccmA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002749 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002652 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002585 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002578 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176718 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002510 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002348 ccmA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133099 ccmA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000191 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002486 ccmA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002488 ccmA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002087 ccmA CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002051 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001688 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002030 ccmA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001988 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002778 ccmA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001366 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010539 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001133 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285822 ccmA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005920 ccmA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062141 ccmA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002804 ccmA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002813 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002118 ccmA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007396 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003693 ccmA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006558 ccmA CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002642 ccmA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006862 ccmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006856 ccmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006157 ccmA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006594 ccmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004237 ccmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005987 ccmA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006801 ccmA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007462 ccmA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000744 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007043 ccmA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005141 ccmA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007028 ccmA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004533 ccmA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006792 ccmA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002325 ccmA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263811 ccmA CDS
Person Approved Go view Shigella boydii 227 ADV-0002340 ccmA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006137 ccmA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006948 ccmA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000990 ccmA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073548 ccmA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088551 ccmA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002443 ccmA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002472 ccmA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002133 VC2057 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001771 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003766 ccmA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000706 ccmA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001053 ccmA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001092 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240163 ccmA3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004500 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002542 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008356 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000582 ccmA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124451 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004216 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005435 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002330 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006266 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005562 ccmA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031255 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007314 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002659 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002426 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005701 ccmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005353 ccmA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002737 ccmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003275 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001760 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20692mutantTn5 InsertionRequest the StrainABE-0007279ccmAccmA::Tn5KAN-2 at position 163 in Plus orientation ,- pKD460Blattner Laboratory
FB20693mutantTn5 InsertionRequest the StrainABE-0007279ccmAccmA::Tn5KAN-2 at position 163 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2292021 to 2302644
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007262ccmHCDScomplement22913582292410Downstream
ABE-0007264ccmGCDScomplement22924072292964Downstream
ABE-0007269ccmFCDScomplement22929612294904Downstream
ABE-0007271ccmECDScomplement22949012295380Downstream
ABE-0007273ccmDCDScomplement22953772295586Downstream
ABE-0007275ccmCCDScomplement22955832296320Downstream
ABE-0007277ccmBCDScomplement22963622297024Overlaps Downstream
ABE-0007279ccmACDScomplement22970212297644Matches
ABE-0007281napCCDScomplement22976572298259Upstream
ABE-0007283napBCDScomplement22982692298718Upstream
ABE-0007285napHCDScomplement22987152299578Upstream
ABE-0007287napGCDScomplement22995652300260Upstream
ABE-0007289napACDScomplement23002672302753Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.