Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007281 (napC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007281 showshow history
Names
napC yejX JW2190 ECK2194 b2202
Product
periplasmic nitrate reductase cytochrome c protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2297657 2298259 603 201
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011885 (IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT) Apr 2008
Automated Process Approved IPR005126 (IPR005126 NapC/NirT cytochrome c, N-terminal) Apr 2008
Automated Process Approved IPR011031 (IPR011031 Multihaem cytochrome) Apr 2008
Automated Process Approved IPR036280 (IPR036280 Multiheme cytochrome superfamily) Jul 2018
Automated Process Approved PF03264 (PF03264 NapC/NirT cytochrome c family, N-terminal region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019333 denitrification pathway GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name napC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym yejX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2190 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2194 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2202 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic nitrate reductase cytochrome c protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name cytochrome c-type protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name periplasmic nitrate reductase, cytochrome c-type protein Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name quinol dehydrogenase, electron source for NapAB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR036280 Multiheme cytochrome superfamily Protein Sequence Similarity - InterPro Domain: IPR036280
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005126 NapC/NirT cytochrome c, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005126
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011031 Multihaem cytochrome Protein Sequence Similarity - InterPro Domain: IPR011031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03264 NapC/NirT cytochrome c family, N-terminal region Protein Sequence Similarity - PFAM Model Name: PF03264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT Protein Sequence Similarity - InterPro Domain: IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12060 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007281 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788530 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABL5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946706 Published Annotation - Entrez Gene Database ID: 946706
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABL5 Published Annotation - Swiss-Prot Accession Number: P0ABL5 Jan 2006
Person Approved function putative enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note cytochrome c-type protein; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75262.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 8.02
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019333 denitrification pathway GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011885
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003207 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002275 napC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002492 napC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003696 napC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002570 napC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003200 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000883 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003046 napC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003779 napC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003342 napC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005162 napC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002261 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009103 napC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002146 napC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002123 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007056 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006634 napC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005413 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078876 napC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002556 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002867 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006487 napC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005824 napC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002492 napC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006936 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000565 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006676 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005202 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006644 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007720 napC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008179 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005753 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005964 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006899 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007248 napC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010255 napC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010126 napC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007421 napC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027177 napC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005038 napC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007013 napC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002775 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002070 napC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002268 napC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002750 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002653 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002586 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002579 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002511 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002349 napC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133100 napC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000190 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002487 napC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003691 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010601 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062151 napC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001115 napC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001685 napC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002127 napC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007382 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006559 napC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000663 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002643 napC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006863 napC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007185 napC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006830 napC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006276 napC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006857 napC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006158 napC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006595 napC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004238 napC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005988 napC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006802 napC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007461 napC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000610 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000609 napC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000743 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007044 napC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005140 napC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006560 napC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005784 napC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110090 napC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082322 napC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002788 napC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097181 napC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007027 napC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004532 napC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006793 napC CDS
Person Approved Go view Shigella boydii 227 ADV-0002339 napC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006136 napC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006947 napC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000989 napC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073549 napC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088552 napC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002444 napC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002473 napC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003570 VCA0680 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000825 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003464 napC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001466 napC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003171 napC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002879 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240721 napC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006903 napC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002687 napC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006287 napC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000477 napC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125481 napC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007615 napC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007079 napC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002734 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004995 napC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005688 napC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031124 napC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008731 napC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001624 napC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002568 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005575 napC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005234 napC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002853 napC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003422 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001620 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20694mutantTn5 InsertionRequest the StrainABE-0007281napCnapC::Tn5KAN-2 at position 245 in Minus orientation ,- pKD460Blattner Laboratory
FB20695mutantTn5 InsertionRequest the StrainABE-0007281napCnapC::Tn5KAN-2 at position 245 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2292657 to 2303259
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007264ccmGCDScomplement22924072292964Downstream
ABE-0007269ccmFCDScomplement22929612294904Downstream
ABE-0007271ccmECDScomplement22949012295380Downstream
ABE-0007273ccmDCDScomplement22953772295586Downstream
ABE-0007275ccmCCDScomplement22955832296320Downstream
ABE-0007277ccmBCDScomplement22963622297024Downstream
ABE-0007279ccmACDScomplement22970212297644Downstream
ABE-0007281napCCDScomplement22976572298259Matches
ABE-0007283napBCDScomplement22982692298718Upstream
ABE-0007285napHCDScomplement22987152299578Upstream
ABE-0007287napGCDScomplement22995652300260Upstream
ABE-0007289napACDScomplement23002672302753Upstream
ABE-0007291napDCDScomplement23027502303013Upstream
ABE-0007293napFCDScomplement23030032303497Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.