Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007287 (napG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007287 showshow history
Names
napG yojB yojA JW2193 ECK2197 b2205
Product
ferredoxin-type protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2299565 2300260 696 232
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR004494 (IPR004494 MauM/NapG ferredoxin-type protein) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF12838 (PF12838 4Fe-4S dicluster domain) Jul 2018
Automated Process Approved PF12800 (PF12800 4Fe-4S binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name napG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2197 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yojB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2193 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yojA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2205 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ferredoxin-type protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name Fe-S ferredoxin-type protein, electron transfer Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ferredoxin-type protein: electron transfer Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004494 MauM/NapG ferredoxin-type protein Protein Sequence Similarity - InterPro Domain: IPR004494
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF12838 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF12838
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12800 4Fe-4S binding domain Protein Sequence Similarity - PFAM Model Name: PF12800
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.3 (metabolism; energy production/transport; electron carrier) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12064 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788533 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945544 Published Annotation - Entrez Gene Database ID: 945544
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AAL3 Published Annotation - Swiss-Prot Accession Number: P0AAL3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAL3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007287 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function carrier; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ferredoxin-type protein: electron transfer; GO_function: GO:0009055 - electron carrier activity; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75265.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003205 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002892 napG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003034 napG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005454 napG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002863 napG CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003049 napG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003782 napG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003339 napG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005165 napG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002264 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009100 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002149 napG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002120 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007051 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006637 napG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005410 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078881 napG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002559 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002870 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006490 napG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005827 napG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002495 napG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006939 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000568 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006679 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005205 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006647 napG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007723 napG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008182 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005750 napG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005967 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006902 napG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007251 napG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010258 napG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010129 napG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007424 napG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027180 napG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005041 napG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007016 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002778 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002073 napG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002271 napG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002753 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002656 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002589 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002582 napG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176722 napG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002514 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002352 napG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133103 napG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000187 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002490 napG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003694 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062154 napG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001113 napG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003812 napG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002130 napG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007378 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006562 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000660 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002647 napG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006866 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007201 napG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006845 napG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006273 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006860 napG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006161 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006598 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004241 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005991 napG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006805 napG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007458 napG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000607 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000606 napG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000740 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007047 napG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005137 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006563 napG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005787 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110102 napG CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082319 napG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002791 napG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097187 napG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007024 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004529 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006796 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264402 napG CDS
Person Approved Go view Shigella boydii 227 ADV-0002336 napG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006133 napG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006944 napG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000986 napG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073552 napG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088555 napG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002447 napG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002476 napG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20700mutantTn5 InsertionRequest the StrainABE-0007287napGnapG::Tn5KAN-2 at position 647 in Minus orientation ,- pKD460Blattner Laboratory
FB20701mutantTn5 InsertionRequest the StrainABE-0007287napGnapG::Tn5KAN-2 at position 647 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2294565 to 2305260
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007269ccmFCDScomplement22929612294904Downstream
ABE-0007271ccmECDScomplement22949012295380Downstream
ABE-0007273ccmDCDScomplement22953772295586Downstream
ABE-0007275ccmCCDScomplement22955832296320Downstream
ABE-0007277ccmBCDScomplement22963622297024Downstream
ABE-0007279ccmACDScomplement22970212297644Downstream
ABE-0007281napCCDScomplement22976572298259Downstream
ABE-0007283napBCDScomplement22982692298718Downstream
ABE-0007285napHCDScomplement22987152299578Overlaps Downstream
ABE-0007287napGCDScomplement22995652300260Matches
ABE-0007289napACDScomplement23002672302753Upstream
ABE-0007291napDCDScomplement23027502303013Upstream
ABE-0007293napFCDScomplement23030032303497Upstream
ABE-0285187yojOCDSforward23036062303770Upstream
ABE-0007297ecoCDSforward23039052304393Upstream
ABE-0285502repeat_regionforward23044172305071Upstream
ABE-0007300mqoCDScomplement23051082306754Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.