Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007289 (napA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007289 showshow history
Names
napA yojD yojE yojC JW2194 ECK2198 b2206
Product
periplasmic nitrate reductase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2300267 2302753 2487 829
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR010051 (IPR010051 Periplasmic nitrate reductase, large subunit) Apr 2008
Automated Process Approved IPR006963 (IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain) Apr 2008
Automated Process Approved IPR019546 (IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal) Jul 2018
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Automated Process Approved PF04879 (PF04879 Molybdopterin oxidoreductase Fe4S4 domain) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006963, IPR006656, IPR010051
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name napA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym yojC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yojD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yojE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2194 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2198 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2206 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic nitrate reductase subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name periplasmic nitrate reductase, large subunit, in complex with NapB Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR010051 Periplasmic nitrate reductase, large subunit Protein Sequence Similarity - InterPro Domain: IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04879 Molybdopterin oxidoreductase Fe4S4 domain Protein Sequence Similarity - PFAM Model Name: PF04879
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Protein Sequence Similarity - InterPro Domain: IPR019546
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.7.99.4 Published Annotation - Swiss-Prot Accession Number: P33937 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788534 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947093 Published Annotation - Entrez Gene Database ID: 947093
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12067 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33937 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33937 Published Annotation - Swiss-Prot Accession Number: P33937 Jan 2005
Automated Process Approved db xref ASAP:ABE-0007289 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable nitrate reductase 3; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75266.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006963, IPR006656, IPR010051
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002940 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001342 napA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001062 napA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003700 napA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001150 napA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003202 napA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000881 napA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003050 napA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003783 napA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003338 napA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005166 napA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002265 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009099 napA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002150 napA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002119 napA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007049 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006638 napA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005409 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078882 napA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002561 napA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002871 napA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006491 napA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005828 napA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002496 napA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006940 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000569 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005206 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006648 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007724 napA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008183 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005749 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005968 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006903 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007252 napA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010259 napA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010130 napA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007425 napA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027181 napA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005042 napA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007017 napA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002779 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002074 napA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002272 napA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002754 napA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002657 napA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002590 napA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002583 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002515 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002353 napA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133104 napA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000186 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002491 napA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003695 napA CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010603 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062155 napA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001112 napA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002131 napA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007376 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006563 napA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000659 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002648 napA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006867 napA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007206 napA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006850 napA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006272 napA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006861 napA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006162 napA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006599 napA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004242 napA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005992 napA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006806 napA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007457 napA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000606 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000605 napA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000739 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007048 napA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006564 napA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005788 napA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110107 napA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082318 napA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002792 napA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097190 napA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007023 napA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004528 napA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006797 napA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264403 napA CDS
Person Approved Go view Shigella boydii 227 ADV-0002335 napA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006132 napA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006943 napA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000985 napA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073553 napA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088556 napA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002448 napA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002477 napA CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0003568 VCA0678 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000823 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003453 napA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001468 napA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003173 napA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002877 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240728 napA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006906 napA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002691 napA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006290 napA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000475 napA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125488 napA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007612 napA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007076 napA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002737 CDSp
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004998 napA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247536 napA pseudogene
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008728 napA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001620 napA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002572 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005573 napA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005232 napA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002855 napA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003426 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001616 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2295267 to 2307753
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007271ccmECDScomplement22949012295380Downstream
ABE-0007273ccmDCDScomplement22953772295586Downstream
ABE-0007275ccmCCDScomplement22955832296320Downstream
ABE-0007277ccmBCDScomplement22963622297024Downstream
ABE-0007279ccmACDScomplement22970212297644Downstream
ABE-0007281napCCDScomplement22976572298259Downstream
ABE-0007283napBCDScomplement22982692298718Downstream
ABE-0007285napHCDScomplement22987152299578Downstream
ABE-0007287napGCDScomplement22995652300260Downstream
ABE-0007289napACDScomplement23002672302753Matches
ABE-0007291napDCDScomplement23027502303013Overlaps Upstream
ABE-0007293napFCDScomplement23030032303497Upstream
ABE-0285187yojOCDSforward23036062303770Upstream
ABE-0007297ecoCDSforward23039052304393Upstream
ABE-0285502repeat_regionforward23044172305071Upstream
ABE-0007300mqoCDScomplement23051082306754Upstream
ABE-0007303yojICDScomplement23069722308615Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.