Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007300 (mqo) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007300 showshow history
Names
mqo JW2198 ECK2202 yojH b2210
Product
malate:quinone oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2305108 2306754 1647 549
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006231 (IPR006231 Malate:quinone-oxidoreductase) Apr 2008
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF06039 (PF06039 Malate:quinone oxidoreductase (Mqo)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008924 malate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006231
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mqo Experimental - PubMed ID: 11092847
Reference: Escherichia coli 		Aug 2002
Person Approved synonym yojH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2202 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2198 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2210 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product malate:quinone oxidoreductase Experimental - PubMed ID: 11092847
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name malate dehydrogenase, FAD/NAD(P)-binding domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006231 Malate:quinone-oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06039 Malate:quinone oxidoreductase (Mqo) Protein Sequence Similarity - PFAM Model Name: PF06039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved EC number 1.1.5.4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12069 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946702 Published Annotation - Entrez Gene Database ID: 946702
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788539 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33940 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33940 Published Annotation - Swiss-Prot Accession Number: P33940 Jan 2005
Automated Process Approved note GO_process: GO:0006099 - tricarboxylic acid cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75270.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008924 malate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006231
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002186 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002468 mqo CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001992 mqo CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001573 mqo CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002152 mqo CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001661 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001375 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001582 mqo CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003054 mqo CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003787 mqo CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005983 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015393 mqo CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002884 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003653 mqo CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003334 mqo CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005171 mqo CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002270 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009094 mqo CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002154 mqo CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002114 mqo CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007043 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006644 mqo CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005404 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078888 mqo CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002565 mqo CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002876 mqo CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006497 mqo CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005834 mqo CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002501 mqo CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006944 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000574 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006686 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005211 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006653 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007729 mqo CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008188 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005744 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005973 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006908 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007257 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010264 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010135 mqo CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007430 mqo CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027185 mqo CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005047 mqo CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007022 mqo CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002784 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002078 mqo CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002276 mqo CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002759 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002662 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002595 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002588 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176729 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002519 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002358 mqo CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133108 mqo CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000181 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002497 mqo CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003537 mqo CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002515 mqo CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000973 mqo CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007456 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063369 mqo CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001775 mqo CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004088 mqo CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000327 mqo CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007868 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001165 mqo CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004282 mqo CDS
Person Approved Go view Shigella boydii 227 ADV-0002331 yojH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006127 mqo CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006939 mqo CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000978 yojH CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073558 mqo pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0002481 mqo CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000277 mqo CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23396mutantTn5 InsertionRequest the StrainABE-0007300mqoyojH::Tn5KAN-I-SceI at position 359 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2300108 to 2311754
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007287napGCDScomplement22995652300260Downstream
ABE-0007289napACDScomplement23002672302753Downstream
ABE-0007291napDCDScomplement23027502303013Downstream
ABE-0007293napFCDScomplement23030032303497Downstream
ABE-0285187yojOCDSforward23036062303770Downstream
ABE-0007297ecoCDSforward23039052304393Downstream
ABE-0285502repeat_regionforward23044172305071Downstream
ABE-0007300mqoCDScomplement23051082306754Matches
ABE-0007303yojICDScomplement23069722308615Upstream
ABE-0007308alkBCDScomplement23086912309341Upstream
ABE-0007311adaCDScomplement23093412310405Upstream
ABE-0007317ftpCDScomplement23104792311534Upstream
ABE-0007321ompCCDScomplement23116462312749Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.