Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007321 (ompC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007321 showshow history
Names
ompC JW2203 butR ECK2207 par meoA b2215
Product
outer membrane porin protein C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2311646 2312749 1104 368
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Apr 2008
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Apr 2008
Automated Process Approved IPR013793 (IPR013793 Porin, Gram-negative type, conserved site) Apr 2008
Automated Process Approved PF00267 (PF00267 Gram-negative porin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym meoA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2207 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2203 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym butR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym par Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2215 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product outer membrane porin protein C Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name outer membrane protein 1b (Ib;c) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name outer membrane pore protein 1b (Ib;c) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR013793 Porin, Gram-negative type, conserved site Protein Sequence Similarity - InterPro Domain: IPR013793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00267 Gram-negative porin Protein Sequence Similarity - PFAM Model Name: PF00267
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.1 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The General Bacterial Porin (GBP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.92 (transport; substrate; hydrophilic molecules) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10670 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788544 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946716 Published Annotation - Entrez Gene Database ID: 946716
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0007321 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06996 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P06996 Published Annotation - Swiss-Prot Accession Number: P06996 Jan 2005
Person Approved function membrane; Outer membrane constituents Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane protein 1b (Ib;c); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75275.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by acetate; expression is induced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000029 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002070 ompC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002056 ompC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000379 ompC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002120 ompC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001310 ompC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001067 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003061 ompC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003794 ompC CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0303142 ompC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002530 ompC CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001284 ompC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003327 ompC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005176 ompC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002276 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009089 ompC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002159 ompC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002109 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007037 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006649 ompC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005398 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0003579 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078895 ompC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002571 ompC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002881 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006502 ompC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005840 ompC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002506 ompC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006949 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000580 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006691 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005216 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006658 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007734 ompC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008193 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005739 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005978 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006913 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007262 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007435 ompC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027190 ompC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005052 ompC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007027 ompC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002789 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002083 ompC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002281 ompC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002764 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002667 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002600 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002593 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176735 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002524 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002363 ompC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133113 ompC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000175 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002504 ompC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002377 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003007 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002645 ompC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000981 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001959 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0002076 CDS
Person Uncurated Go view Pantoea ananatis AJ13355 AOV-0001927 ompC CDS
Person Uncurated Go view Pantoea ananatis B1-9 APL-0002095 CDS
Person Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002675 ompC CDS
Person Uncurated Go view Pantoea ananatis PA13 APK-0001471 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0010434 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0001225 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289652 ompC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006572 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000650 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002655 ompC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006875 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007245 ompC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006888 ompC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006264 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006869 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006171 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006607 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004250 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006000 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006814 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007449 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000598 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000597 ompC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000729 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007056 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005127 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006572 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005796 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110138 ompC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082310 ompC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002801 ompC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097218 ompC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007014 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004520 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006806 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002455 CDS
Person Approved Go view Shigella boydii 227 ADV-0002326 ompC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006121 ompC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000973 ompC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073563 ompC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088564 ompC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002456 ompC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002486 ompC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003347 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004228 meoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000583 meoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003226 ompC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003105 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236339 ompC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005555 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001141 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005319 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002153 ompC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119321 ompC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006075 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004716 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007732 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005266 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032712 ompC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005416 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003310 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002965 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006750 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001330 ompC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001599 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003370 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013867 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000811 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20710mutantTn5 InsertionRequest the StrainABE-0007321ompCompC::Tn5KAN-2 at position 469 in Plus orientation ,+ pKD460Blattner Laboratory
FB20711mutantTn5 InsertionRequest the StrainABE-0007321ompCompC::Tn5KAN-2 at position 469 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2306646 to 2317749
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007300mqoCDScomplement23051082306754Downstream
ABE-0007303yojICDScomplement23069722308615Downstream
ABE-0007308alkBCDScomplement23086912309341Downstream
ABE-0007311adaCDScomplement23093412310405Downstream
ABE-0007317ftpCDScomplement23104792311534Downstream
ABE-0007321ompCCDScomplement23116462312749Matches
ABE-0047259micFncRNAforward23130842313176Upstream
ABE-0007330rcsDCDSforward23134882316160Upstream
ABE-0007333rcsBCDSforward23161772316827Upstream
ABE-0285503repeat_regionforward23168342317030Upstream
ABE-0007336rcsCCDScomplement23170272319876Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.