Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007347 (atoD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007347 showshow history
Names
atoD JW2215 ECK2214 b2221
Product
acetyl-CoA:acetoacetyl-CoA transferase subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2323447 2324109 663 221
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004165 (IPR004165 Coenzyme A transferase family I) Apr 2008
Automated Process Approved IPR012792 (IPR012792 3-oxoacid CoA-transferase, subunit A) Apr 2008
Automated Process Approved IPR004163 (IPR004163 Coenzyme A transferase binding site) Apr 2008
Automated Process Approved IPR037171 (IPR037171 NagB/RpiA transferase-like) Jul 2018
Automated Process Approved PF01144 (PF01144 Coenzyme A transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atoD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2214 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2215 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2221 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acetyl-CoA:acetoacetyl-CoA transferase subunit alpha Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acetyl-CoA:acetoacetyl-CoA transferase alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR004165 Coenzyme A transferase family I Protein Sequence Similarity - InterPro Domain: IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012792 3-oxoacid CoA-transferase, subunit A Protein Sequence Similarity - InterPro Domain: IPR012792
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004163 Coenzyme A transferase binding site Protein Sequence Similarity - InterPro Domain: IPR004163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01144 Coenzyme A transferase Protein Sequence Similarity - PFAM Model Name: PF01144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037171 NagB/RpiA transferase-like Protein Sequence Similarity - InterPro Domain: IPR037171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.8.3.8 Published Annotation - Swiss-Prot Accession Number: P76458 Feb 2006
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788551 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76458 Published Annotation - Swiss-Prot Accession Number: P76458 Jan 2005
Automated Process Approved db xref GeneID:947525 Published Annotation - Entrez Gene Database ID: 947525
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007347 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11669 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Fatty acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetyl-CoA:acetoacetyl-CoA transferase alpha subunit; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75281.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002885 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003857 atoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003442 atoD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004329 atoD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003852 atoD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004584 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003069 atoD_4 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003319 pcaI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005184 pcaI CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009079 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002171 atoD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002103 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007029 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078901 atoD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002578 atoD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002513 atoD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005059 atoD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007036 pcaI CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002089 atoD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002292 atoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002675 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002608 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002599 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176745 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002369 pcaI CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002510 atoD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000141 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005985 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061530 atoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000720 atoD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001144 atoD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005845 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145472 atoD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003513 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265471 atoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005881 pcaI CDS
Person Approved Go view Shigella sonnei 046 ADD-0002494 atoD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003380 atoD_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003800 atoD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2318447 to 2329109
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007336rcsCCDScomplement23170272319876Upstream
ABE-0007341atoSCDSforward23200432321869Upstream
ABE-0007343atoCCDSforward23218662323251Upstream
ABE-0007347atoDCDSforward23234472324109Matches
ABE-0007349atoACDSforward23241092324759Overlaps Downstream
ABE-0007353atoECDSforward23247562326078Downstream
ABE-0007355atoBCDSforward23261092327293Downstream
ABE-0007357yfaPCDScomplement23273672328143Downstream
ABE-0007359yfaQCDScomplement23281482329797Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.