Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007349 (atoA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007349 showshow history
Names
atoA JW2216 ECK2215 b2222
Product
acetyl-CoA:acetoacetyl-CoA transferase subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2324109 2324759 651 217
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004165 (IPR004165 Coenzyme A transferase family I) Apr 2008
Automated Process Approved IPR012791 (IPR012791 3-oxoacid CoA-transferase, subunit B) Apr 2008
Automated Process Approved IPR004164 (IPR004164 Coenzyme A transferase active site) Apr 2008
Automated Process Approved IPR037171 (IPR037171 NagB/RpiA transferase-like) Jul 2018
Automated Process Approved PF01144 (PF01144 Coenzyme A transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atoA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2215 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2216 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2222 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acetyl-CoA:acetoacetyl-CoA transferase subunit beta Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name acetyl-CoA:acetoacetyl-CoA transferase, beta subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acetyl-CoA:acetoacetyl-CoA transferase beta subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR004165 Coenzyme A transferase family I Protein Sequence Similarity - InterPro Domain: IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012791 3-oxoacid CoA-transferase, subunit B Protein Sequence Similarity - InterPro Domain: IPR012791
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037171 NagB/RpiA transferase-like Protein Sequence Similarity - InterPro Domain: IPR037171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01144 Coenzyme A transferase Protein Sequence Similarity - PFAM Model Name: PF01144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004164 Coenzyme A transferase active site Protein Sequence Similarity - InterPro Domain: IPR004164
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.8.3.8 Published Annotation - Swiss-Prot Accession Number: P76459 Feb 2006
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946719 Published Annotation - Entrez Gene Database ID: 946719
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76459 Published Annotation - Swiss-Prot Accession Number: P76459 Jan 2005
Automated Process Approved db xref GI:1788552 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76459 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007349 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11670 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Fatty acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetyl-CoA:acetoacetyl-CoA transferase beta subunit; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75282.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002884 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003885 atoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003446 atoA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004324 atoA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003864 atoA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004583 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003070 atoA_3 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003318 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005185 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002284 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009078 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002172 atoA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002102 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007028 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078902 atoA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002579 atoA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002514 atoA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005060 atoA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007037 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002797 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002090 atoA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002293 atoA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002676 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002609 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002600 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176746 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002370 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002511 atoA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000142 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002060 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005986 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061529 atoA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000722 atoA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001143 atoA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005844 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145474 atoA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003514 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000413 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265470 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005882 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002495 atoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003381 atoA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003799 atoA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22908mutantTn5 InsertionRequest the StrainABE-0007349atoAatoA::Tn5(KAN-I-SceI) at position 269 in Plus orientation ,+ pKD46 Odd analysis problem--good seq-good mutant 0Blattner Laboratory
FB23398mutantTn5 InsertionRequest the StrainABE-0007349atoAatoA::Tn5KAN-I-SceI at position 269 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2319109 to 2329759
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007336rcsCCDScomplement23170272319876Upstream
ABE-0007341atoSCDSforward23200432321869Upstream
ABE-0007343atoCCDSforward23218662323251Upstream
ABE-0007347atoDCDSforward23234472324109Overlaps Upstream
ABE-0007349atoACDSforward23241092324759Matches
ABE-0007353atoECDSforward23247562326078Overlaps Downstream
ABE-0007355atoBCDSforward23261092327293Downstream
ABE-0007357yfaPCDScomplement23273672328143Downstream
ABE-0007359yfaQCDScomplement23281482329797Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.