Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007353 (atoE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007353 showshow history
Names
atoE JW2217 ECK2216 b2223
Product
short chain fatty acid transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2324756 2326078 1323 441
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006160 (IPR006160 Short chain fatty acid transporter AtoE) Apr 2008
Automated Process Approved IPR006161 (IPR006161 Conserved hypothetical protein CHP00336) Apr 2008
Automated Process Approved PF02667 (PF02667 Short chain fatty acid transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015912 short-chain fatty acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015635 (DEPRECATED) short-chain fatty acid transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atoE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2217 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2216 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2223 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product short chain fatty acid transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name short chain fatty acid transporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name short-chain fatty acid transport protein (scFAT family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006160 Short chain fatty acid transporter AtoE Protein Sequence Similarity - InterPro Domain: IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02667 Short chain fatty acid transporter Protein Sequence Similarity - PFAM Model Name: PF02667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006161 Conserved hypothetical protein CHP00336 Protein Sequence Similarity - InterPro Domain: IPR006161
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.A.13 (transport; Transporters of Unknown Classification; recognized transporters of unknown biochemical mechanism; The Short Chain Fatty Acid Transporter (scFAT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.52 (transport; substrate; fatty acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946721 Published Annotation - Entrez Gene Database ID: 946721
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76460 Published Annotation - Swiss-Prot Accession Number: P76460 Jan 2005
Automated Process Approved db xref GI:1788553 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76460 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007353 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11671 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Degradation of small molecules: Fatty acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75283.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015912 short-chain fatty acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015635 (DEPRECATED) short-chain fatty acid transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005733 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005058 atoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005272 atoE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009583 atoE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004391 atoE CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004582 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003071 atoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003317 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005186 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002285 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009077 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002173 atoE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002101 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007026 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078903 atoE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002580 atoE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002515 atoE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005061 atoE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007038 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002798 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002091 atoE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002294 atoE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002677 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002610 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002601 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176747 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002371 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002512 atoE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000143 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264957 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005883 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002496 atoE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003382 atoE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003798 atoE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22837mutantTn5 InsertionRequest the StrainABE-0007353atoEatoE::Tn5(KAN-I-SceI) at position 1227 in Plus orientation ,+ pKD46 0Blattner Laboratory
FB23399mutantTn5 InsertionRequest the StrainABE-0007353atoEatoE::Tn5KAN-I-SceI at position 1227 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2319756 to 2331078
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007336rcsCCDScomplement23170272319876Upstream
ABE-0007341atoSCDSforward23200432321869Upstream
ABE-0007343atoCCDSforward23218662323251Upstream
ABE-0007347atoDCDSforward23234472324109Upstream
ABE-0007349atoACDSforward23241092324759Overlaps Upstream
ABE-0007353atoECDSforward23247562326078Matches
ABE-0007355atoBCDSforward23261092327293Downstream
ABE-0007357yfaPCDScomplement23273672328143Downstream
ABE-0007359yfaQCDScomplement23281482329797Downstream
ABE-0007362yfaS_2CDSpcomplement23297982330283Downstream
ABE-0285101yfaSpseudogenecomplement23297982334402Downstream
ABE-0007364yfaS_1CDSpcomplement23302992334402Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.