Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007374 (ubiG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007374 showshow history
Names
ubiG yfaB pufX JW2226 ECK2224 b2232
Product
bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2339567 2340289 723 241
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000802
EnteroFam0007374: Trusted threshold=662.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013216 (IPR013216 Methyltransferase type 11) Apr 2008
Automated Process Approved IPR010233 (IPR010233 Ubiquinone biosynthesis O-methyltransferase) Apr 2008
Automated Process Approved IPR029063 (IPR029063 S-adenosyl-L-methionine-dependent methyltransferase) Jul 2018
Automated Process Approved PF13489 (PF13489 Methyltransferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Automated Process Approved GO molecular function GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ubiG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2226 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfaB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym pufX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2224 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2232 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007374: Trusted threshold=662.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000802
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13489 Methyltransferase domain Protein Sequence Similarity - PFAM Model Name: PF13489
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010233 Ubiquinone biosynthesis O-methyltransferase Protein Sequence Similarity - InterPro Domain: IPR010233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Protein Sequence Similarity - InterPro Domain: IPR029063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013216 Methyltransferase type 11 Protein Sequence Similarity - InterPro Domain: IPR013216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.1.1.64 Published Annotation - Swiss-Prot Accession Number: P17993 Feb 2006
Automated Process Uncurated EC number 2.1.1.- Published Annotation - Database Name: EC2GO: GO:0008425
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788564 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P17993 Published Annotation - Swiss-Prot Accession Number: P17993 Jan 2005
Automated Process Approved db xref ASAP:ABE-0007374 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946607 Published Annotation - Entrez Gene Database ID: 946607
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17993 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75292.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Automated Process Approved GO molecular function GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000802 ubiG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001414 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000496 ubiG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000380 ubiG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000987 ubiG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000786 ubiG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003461 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004569 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001304 ubiG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001062 ubiG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003079 ubiG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003800 ubiG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008010 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017292 ubiG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001123 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003660 ubiG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303173 ubiG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002538 ubiG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001277 ubiG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003307 ubiG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005195 ubiG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002293 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008991 ubiG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002182 ubiG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002093 ubiG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007013 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006662 ubiG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006702 ubiG pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078911 ubiG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002588 ubiG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002963 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006513 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005851 ubiG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002523 ubiG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006962 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000593 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006703 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005229 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006671 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007747 ubiG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008206 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005726 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005991 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006925 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007275 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006922 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006152 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007448 ubiG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027202 ubiG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005069 ubiG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007046 ubiG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002806 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002100 ubiG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002304 ubiG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002776 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002685 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002618 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002609 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176760 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002534 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002382 ubiG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133125 ubiG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000163 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002520 ubiG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002389 ubiG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003407 ubiG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002650 ubiG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000986 ubiG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005573 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001971 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001768 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001937 ubiG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002083 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002688 ubiG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001458 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010441 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001212 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285920 ubiG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005845 ubiG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061446 ubiG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004078 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003637 ubiG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001097 ubiG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005776 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143834 ubiG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001772 ubiG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006581 ubiG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000644 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002668 ubiG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006884 ubiG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007284 ubiG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006921 ubiG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006254 ubiG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006878 ubiG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006180 ubiG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006616 ubiG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004259 ubiG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006009 ubiG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006823 ubiG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007440 ubiG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000589 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000588 ubiG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000716 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007065 ubiG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005118 ubiG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006582 ubiG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006556 ubiG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110166 ubiG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082300 ubiG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002814 ubiG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097260 ubiG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007005 ubiG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004509 ubiG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006817 ubiG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002447 ubiG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266000 ubiG CDS
Person Approved Go view Shigella boydii 227 ADV-0002287 ubiG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008018 ubiG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005893 ubiG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002790 ubiG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073580 ubiG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088576 ubiG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002470 ubiG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002505 ubiG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001329 VC1257 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000624 ubiG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005131 ubiG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003416 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004195 pufX CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000589 pufX_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003232 ubiG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003367 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236361 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005420 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001131 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005311 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002158 ubiG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119290 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006067 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004724 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007724 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005275 ubiG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032719 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005426 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003321 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002976 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006475 ubiG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006758 ubiG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001323 ubiG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003381 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017041 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003002 ubiG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2334567 to 2345289
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007366yfaTCDScomplement23343362334959Upstream
ABE-0007368yfaACDScomplement23349562336644Upstream
ABE-0007370gyrACDScomplement23367932339420Upstream
ABE-0007374ubiGCDSforward23395672340289Matches
ABE-0285504repeat_regionforward23403132340394Downstream
ABE-0007377yfaLCDScomplement23404172344169Downstream
ABE-0285188ypaBCDScomplement23445942344737Downstream
ABE-0007383nrdACDSforward23448652347150Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.