Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007383 (nrdA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007383 showshow history
Names
nrdA JW2228 ECK2226 dnaF b2234
Product
ribonucleoside diphosphate reductase 1 subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2344865 2347150 2286 762
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005144 (IPR005144 ATP-cone domain) Apr 2008
Automated Process Approved IPR013509 (IPR013509 Ribonucleotide reductase large subunit, N-terminal) Apr 2008
Automated Process Approved IPR000788 (IPR000788 Ribonucleotide reductase large subunit, C-terminal) Apr 2008
Automated Process Approved IPR013346 (IPR013346 Ribonucleotide reductase, class I , alpha subunit) Apr 2008
Automated Process Approved IPR008926 (IPR008926 Ribonucleotide reductase R1 subunit, N-terminal) Apr 2008
Automated Process Approved PF00317 (PF00317 Ribonucleotide reductase, all-alpha domain) Jul 2018
Automated Process Approved PF02867 (PF02867 Ribonucleotide reductase, barrel domain) Jul 2018
Automated Process Approved PF03477 (PF03477 ATP cone domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509, IPR000788, IPR013346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym dnaF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2228 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2226 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2234 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ribonucleoside diphosphate reductase 1 subunit alpha Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name ribonucleoside-diphosphate reductase 1, alpha subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name ribonucleoside diphosphate reductase 1, alpha subunit, B1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name ribonucleoside diphosphate reductase 1, alpha subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR005144 ATP-cone domain Protein Sequence Similarity - InterPro Domain: IPR005144
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013509 Ribonucleotide reductase large subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00317 Ribonucleotide reductase, all-alpha domain Protein Sequence Similarity - PFAM Model Name: PF00317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000788 Ribonucleotide reductase large subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013346 Ribonucleotide reductase, class I , alpha subunit Protein Sequence Similarity - InterPro Domain: IPR013346
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02867 Ribonucleotide reductase, barrel domain Protein Sequence Similarity - PFAM Model Name: PF02867
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03477 ATP cone domain Protein Sequence Similarity - PFAM Model Name: PF03477
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.17.4.1 Published Annotation - Swiss-Prot Accession Number: P00452 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946612 Published Annotation - Entrez Gene Database ID: 946612
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00452 Published Annotation - Swiss-Prot Accession Number: P00452 Jan 2005
Automated Process Approved db xref GI:2367133 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007383 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10660 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; 2'-Deoxyribonucleotide metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ribonucleoside diphosphate reductase 1, alpha subunit, B1; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75294.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509, IPR000788, IPR013346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013509
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000788
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001415 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000117 nrdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000128 nrdA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000191 nrdA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000280 nrdA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003460 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004570 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129449 nrdA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104894 nrdA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104288 nrdA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001303 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001061 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003080 nrdA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003801 nrdA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008011 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020799 nrdA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001122 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303178 nrdA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002539 nrdA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001276 nrdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003303 nrdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005197 nrdA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002295 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008989 nrdA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002184 nrdA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002090 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007011 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006665 nrdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006700 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078913 nrdA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002590 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002965 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006516 nrdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005853 nrdA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002525 nrdA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006966 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000595 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006706 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005231 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006673 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007749 nrdA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008208 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005724 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005993 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006927 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007277 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006920 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006154 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007450 nrdA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027204 nrdA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005072 nrdA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007048 nrdA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002807 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002102 nrdA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002306 nrdA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002611 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176762 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002536 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002384 nrdA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133127 nrdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000161 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002522 nrdA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002390 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003408 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002651 nrdA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000987 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005572 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001973 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001766 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001938 nrdA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002081 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002689 nrdA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001457 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010450 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001211 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285919 nrdA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005846 nrdA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061445 nrdA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000663 nrdA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001535 nrdA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001095 nrdA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005775 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143835 nrdA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006582 nrdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000643 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002669 nrdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006885 nrdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007286 nrdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006923 nrdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006253 nrdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006879 nrdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006181 nrdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006617 nrdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004260 nrdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006010 nrdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006824 nrdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007439 nrdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000588 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000587 nrdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000714 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007066 nrdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005117 nrdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006583 nrdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006557 nrdA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110168 nrdA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082299 nrdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002816 nrdA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097268 nrdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007004 nrdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004508 nrdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006818 nrdA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002446 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266002 nrdA CDS
Person Approved Go view Shigella boydii 227 ADV-0002282 nrdA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008023 nrdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005896 nrdA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002794 nrdA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073586 nrdA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088579 nrdA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002475 nrdA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002509 nrdA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001328 VC1256 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005132 nrdA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003417 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004189 dnaF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000590 nrdA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003233 nrdA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003368 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001130 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005310 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002159 nrdA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119287 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006066 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004725 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007722 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005276 nrdA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032720 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005427 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003322 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006476 nrdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006759 nrdA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001322 nrdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001588 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003382 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017045 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003001 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2339865 to 2352150
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007374ubiGCDSforward23395672340289Upstream
ABE-0285504repeat_regionforward23403132340394Upstream
ABE-0007377yfaLCDScomplement23404172344169Upstream
ABE-0285188ypaBCDScomplement23445942344737Upstream
ABE-0007383nrdACDSforward23448652347150Matches
ABE-0285505repeat_regionforward23471602347362Downstream
ABE-0285799yoaMCDScomplement23473502347385Downstream
ABE-0007386nrdBCDSforward23473842348514Downstream
ABE-0007390yfaECDSforward23485142348768Downstream
ABE-0285506repeat_regionforward23487812348816Downstream
ABE-0007393inaACDScomplement23488222349472Downstream
ABE-0007397yfaHpseudogeneforward23496512349893Downstream
ABE-0007399glpQCDScomplement23499352351011Downstream
ABE-0007401glpTCDScomplement23510162352374Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.