Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007386 (nrdB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007386 showshow history
Names
nrdB JW2229 ECK2227 ftsB b2235
Product
ribonucleoside diphosphate reductase 1 subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2347384 2348514 1131 377
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000358 (IPR000358 Ribonucleotide reductase small subunit family) Apr 2008
Automated Process Approved IPR009078 (IPR009078 Ferritin-like superfamily) Apr 2008
Automated Process Approved IPR012348 (IPR012348 Ribonucleotide reductase-like) Apr 2008
Automated Process Approved PF00268 (PF00268 Ribonucleotide reductase, small chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2227 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2229 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ftsB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2235 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ribonucleoside diphosphate reductase 1 subunit beta Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ribonucleoside-diphosphate reductase 1, beta subunit, B2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name ribonucleoside-diphosphate reductase 1, beta subunit Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR000358 Ribonucleotide reductase small subunit family Protein Sequence Similarity - InterPro Domain: IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00268 Ribonucleotide reductase, small chain Protein Sequence Similarity - PFAM Model Name: PF00268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009078 Ferritin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012348 Ribonucleotide reductase-like Protein Sequence Similarity - InterPro Domain: IPR012348
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.17.4.1 Published Annotation - Swiss-Prot Accession Number: P69924 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007386 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10661 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69924 Published Annotation - Swiss-Prot Accession Number: P69924 Jan 2006
Automated Process Approved db xref GeneID:946732 Published Annotation - Entrez Gene Database ID: 946732
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788567 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69924 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; 2'-Deoxyribonucleotide metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ribonucleoside-diphosphate reductase 1, beta subunit, B2; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75295.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001416 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000327 nrdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000240 nrdB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000190 nrdB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000692 nrdB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003459 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004572 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129448 nrdB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104893 nrdB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104287 nrdB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001302 nrdB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001060 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003081 nrdB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003802 nrdB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008012 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020798 nrdB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001121 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003663 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303183 nrdB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002540 nrdB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001275 nrdB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003302 nrdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005198 nrdB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002296 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008988 nrdB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002185 nrdB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002089 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007010 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006666 nrdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006699 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078914 nrdB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002591 nrdB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002966 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006517 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005854 nrdB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002526 nrdB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006967 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000596 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006707 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005232 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006674 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007750 nrdB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008209 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005723 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005994 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006928 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007278 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006919 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006155 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007451 nrdB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027205 nrdB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005073 nrdB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007049 nrdB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002808 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002103 nrdB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002307 nrdB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002780 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002689 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002622 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002612 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176763 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002537 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002385 nrdB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133128 nrdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000160 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002523 nrdB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002391 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003409 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002652 nrdB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000988 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005571 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001974 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001765 nrdB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001939 nrdB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002080 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002690 nrdB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001456 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010451 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001210 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285918 nrdB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005847 nrdB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061444 nrdB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000658 nrdB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001534 nrdB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001094 nrdB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005774 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143838 nrdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006583 nrdB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000642 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002671 nrdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006886 nrdB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007292 nrdB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006928 nrdB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006252 nrdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006880 nrdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006182 nrdB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006618 nrdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004261 nrdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006011 nrdB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006825 nrdB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007438 nrdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000587 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000586 nrdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000713 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007067 nrdB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005116 nrdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006584 nrdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006558 nrdB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110172 nrdB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082298 nrdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002817 nrdB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097271 nrdB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007003 nrdB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004507 nrdB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006819 nrdB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002445 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266003 nrdB CDS
Person Approved Go view Shigella boydii 227 ADV-0002281 nrdB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008024 nrdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005897 nrdB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002795 nrdB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073588 nrdB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088580 nrdB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002476 nrdB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002510 nrdB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001327 VC1255 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005134 nrdB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003418 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004186 ftsB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000591 nrdB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003234 nrdB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003369 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236363 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005423 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001129 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005309 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002160 nrdB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119284 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006065 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004726 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003749 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007721 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005277 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032721 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005428 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003323 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002978 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006477 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006760 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001321 nrdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001587 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003383 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017054 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003000 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2342384 to 2353514
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007377yfaLCDScomplement23404172344169Upstream
ABE-0285188ypaBCDScomplement23445942344737Upstream
ABE-0007383nrdACDSforward23448652347150Upstream
ABE-0285505repeat_regionforward23471602347362Upstream
ABE-0285799yoaMCDScomplement23473502347385Overlaps Upstream
ABE-0007386nrdBCDSforward23473842348514Matches
ABE-0007390yfaECDSforward23485142348768Overlaps Downstream
ABE-0285506repeat_regionforward23487812348816Downstream
ABE-0007393inaACDScomplement23488222349472Downstream
ABE-0007397yfaHpseudogeneforward23496512349893Downstream
ABE-0007399glpQCDScomplement23499352351011Downstream
ABE-0007401glpTCDScomplement23510162352374Downstream
ABE-0007422glpACDSforward23526472354275Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.