Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007399 (glpQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007399 showshow history
Names
glpQ JW2233 ECK2231 b2239
Product
periplasmic glycerophosphodiester phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2349935 2351011 1077 359
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000804
EnteroFam0007399: Trusted threshold=929.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR004129 (IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase) Apr 2008
Automated Process Approved IPR030395 (IPR030395 Glycerophosphodiester phosphodiesterase domain) Jul 2018
Automated Process Approved IPR017946 (IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily) Jul 2018
Automated Process Approved PF03009 (PF03009 Glycerophosphoryl diester phosphodiesterase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008081 phosphoric diester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glpQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK2231 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2233 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2239 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic glycerophosphodiester phosphodiesterase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glycerophosphodiester phosphodiesterase, periplasmic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007399: Trusted threshold=929.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000804
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF03009 Glycerophosphoryl diester phosphodiesterase family Protein Sequence Similarity - PFAM Model Name: PF03009
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017946
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR030395 Glycerophosphodiester phosphodiesterase domain Protein Sequence Similarity - InterPro Domain: IPR030395
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase Protein Sequence Similarity - InterPro Domain: IPR004129
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 3.1.4.- Published Annotation - Database Name: EC2GO: GO:0008081
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 3.1.4.46 Published Annotation - Swiss-Prot Accession Number: P09394 Feb 2006
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788572 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007399 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P09394 Published Annotation - Swiss-Prot Accession Number: P09394 Jan 2005
Automated Process Approved db xref EcoGene:EG10399 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946725 Published Annotation - Entrez Gene Database ID: 946725
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note glycerophosphodiester phosphodiesterase, periplasmic; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75299.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008081 phosphoric diester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000804 glpQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002728 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002050 glpQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002142 glpQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002122 glpQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002240 glpQ CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001058 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003084 glpQ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003804 glpQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004616 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015029 glpQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003966 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003668 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003300 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005202 glpQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002299 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008984 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002188 glpQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002086 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007005 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006670 glpQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006695 GlpQ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078917 glpQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002597 glpQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002970 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006521 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005858 glpQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002529 glpQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006971 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000603 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006714 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005239 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006681 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007757 glpQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008216 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005716 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006001 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007284 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006913 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006162 glpQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027213 glpQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005076 glpQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007053 glpQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002811 glpQ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002107 glpQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002311 glpQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002784 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002694 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002626 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002615 glpQ CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176766 glpQ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002541 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002390 glpQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133134 glpQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000153 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002526 glpQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003854 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000116 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002654 glpQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000990 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064493 glpQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002460 glpQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004305 glpQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009233 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146201 glpQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006587 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000638 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002675 glpQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006890 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007305 glpQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006941 glpQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006248 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006884 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006186 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006622 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004265 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006015 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006829 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007434 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000583 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000582 glpQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000709 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007071 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005112 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006588 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006563 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110183 glpQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082294 glpQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002821 glpQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097280 glpQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006999 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004503 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006823 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000756 CDS
Person Approved Go view Shigella boydii 227 ADV-0002277 glpQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008030 glpQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005901 glpQ CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002800 glpQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073593 glpQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088584 glpQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002479 glpQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0002519 glpQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003025 VCA0136 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001069 glpQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001854 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000652 glpQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002526 glpQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001689 glpQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003177 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241991 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004669 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000247 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007619 glpQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128184 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008113 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006501 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001033 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008497 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007491 glpQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030009 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006947 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000177 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004128 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008127 glpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004159 glpQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000226 glpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000264 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004738 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017064 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002998 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2344935 to 2356011
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007383nrdACDSforward23448652347150Downstream
ABE-0285505repeat_regionforward23471602347362Downstream
ABE-0285799yoaMCDScomplement23473502347385Downstream
ABE-0007386nrdBCDSforward23473842348514Downstream
ABE-0007390yfaECDSforward23485142348768Downstream
ABE-0285506repeat_regionforward23487812348816Downstream
ABE-0007393inaACDScomplement23488222349472Downstream
ABE-0007397yfaHpseudogeneforward23496512349893Downstream
ABE-0007399glpQCDScomplement23499352351011Matches
ABE-0007401glpTCDScomplement23510162352374Upstream
ABE-0007422glpACDSforward23526472354275Upstream
ABE-0007424glpBCDSforward23542652355524Upstream
ABE-0007426glpCCDSforward23555212356711Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.