Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007401 (glpT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007401 showshow history
Names
glpT JW2234 ECK2232 b2240
Product
sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2351016 2352374 1359 453
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR005267 (IPR005267 Glycerol-3-phosphate transporter) Apr 2008
Automated Process Approved IPR000849 (IPR000849 Sugar phosphate transporter) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015169 glycerol-3-phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2234 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2232 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2240 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product sn-glycerol-3-phosphate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name sn-glycerol-3-phosphate permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sn-glycerol-3-phosphate transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005267 Glycerol-3-phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR005267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000849 Sugar phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR000849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.78 (transport; substrate; glycerol-3-P) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946704 Published Annotation - Entrez Gene Database ID: 946704
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P08194 Published Annotation - Swiss-Prot Accession Number: P08194 Jan 2005
Automated Process Approved db xref GI:1788573 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007401 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10401 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sn-glycerol-3-phosphate permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75300.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015169 glycerol-3-phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001861 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002159 glpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001912 glpT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002121 glpT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001596 glpT CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002360 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001300 glpT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001057 glpT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003085 glpT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003805 glpT_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004618 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015031 glpT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003965 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003669 glpT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296622 glpT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000273 glpT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000253 glpT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003299 glpT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005203 glpT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002300 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008983 glpT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002189 glpT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002085 glpT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007004 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006671 glpT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006694 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078918 glpT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002598 glpT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002971 glpT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006522 glpT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005859 glpT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002530 glpT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006972 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000604 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006715 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005240 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006682 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007758 glpT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008217 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005715 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006002 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007285 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006912 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006163 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007460 glpT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027214 glpT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005077 glpT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007054 glpT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002812 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002108 glpT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002312 glpT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002785 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002695 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002627 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002616 glpT CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002542 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002391 glpT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133135 glpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000152 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002527 glpT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003855 glpT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000117 glpT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002655 glpT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000991 glpT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004636 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003291 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000138 glpT CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003423 glpT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000556 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000189 glpT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004197 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003619 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288652 glpT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007179 glpT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064492 glpT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002459 glpT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002242 glpT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002541 glpT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009232 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146197 glpT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005316 glpT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006588 glpT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000637 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002676 glpT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006891 glpT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007310 glpT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006946 glpT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006247 glpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006885 glpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006187 glpT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006623 glpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004266 glpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006016 glpT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006830 glpT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007433 glpT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000582 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000581 glpT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000708 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007072 glpT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005111 glpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006589 glpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006564 glpT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110185 glpT CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082293 glpT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002822 glpT CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097282 glpT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006998 glpT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004502 glpT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006824 glpT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000755 glpT CDS
Person Approved Go view Shigella boydii 227 ADV-0002276 glpT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008031 glpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005902 glpT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002801 glpT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073594 glpT CDS
Person Approved Go view Shigella flexneri 301 ABT-0088585 glpT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002480 glpT CDS
Person Approved Go view Shigella sonnei 046 ADD-0002520 glpT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003026 VCA0137 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001072 glpT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001855 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000654 glpT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002527 glpT_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001688 glpT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003178 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004160 glpT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20721mutantTn5 InsertionRequest the StrainABE-0007401glpTglpT::Tn5KAN-2 at position 822 in Plus orientation ,- pKD460Blattner Laboratory
FB20722mutantTn5 InsertionRequest the StrainABE-0007401glpTglpT::Tn5KAN-2 at position 822 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2346016 to 2357374
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007383nrdACDSforward23448652347150Downstream
ABE-0285505repeat_regionforward23471602347362Downstream
ABE-0285799yoaMCDScomplement23473502347385Downstream
ABE-0007386nrdBCDSforward23473842348514Downstream
ABE-0007390yfaECDSforward23485142348768Downstream
ABE-0285506repeat_regionforward23487812348816Downstream
ABE-0007393inaACDScomplement23488222349472Downstream
ABE-0007397yfaHpseudogeneforward23496512349893Downstream
ABE-0007399glpQCDScomplement23499352351011Downstream
ABE-0007401glpTCDScomplement23510162352374Matches
ABE-0007422glpACDSforward23526472354275Upstream
ABE-0007424glpBCDSforward23542652355524Upstream
ABE-0007426glpCCDSforward23555212356711Upstream
ABE-0007429rpnECDSforward23569042357803Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.