Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007422 (glpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007422 showshow history
Names
glpA JW2235 ECK2233 b2241
Product
anaerobic glycerol-3-phosphate dehydrogenase subunit A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2352647 2354275 1629 543
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000805
EnteroFam0007422: Trusted threshold=1430.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Apr 2008
Automated Process Approved IPR007419 (IPR007419 BFD-like [2Fe-2S]-binding domain) Apr 2008
Automated Process Approved IPR000447 (IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase) Apr 2008
Automated Process Approved IPR017752 (IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01266 (PF01266 FAD dependent oxidoreductase) Jul 2018
Automated Process Approved PF04324 (PF04324 BFD-like [2Fe-2S] binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0046174 polyol catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076, IPR017752, IPR000447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glpA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2233 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2235 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2241 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product anaerobic glycerol-3-phosphate dehydrogenase subunit A Published Annotation - EcoCyc Accession Number: EG10391
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sn-glycerol-3-phosphate dehydrogenase FAD/NAD(P)-binding (anaerobic), large subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007422: Trusted threshold=1430.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000805
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01266 FAD dependent oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF01266
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04324 BFD-like [2Fe-2S] binding domain Protein Sequence Similarity - PFAM Model Name: PF04324
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit Protein Sequence Similarity - InterPro Domain: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007419 BFD-like [2Fe-2S]-binding domain Protein Sequence Similarity - InterPro Domain: IPR007419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved EC number 1.1.5.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10391 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007422 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788574 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9C0 Published Annotation - Swiss-Prot Accession Number: P0A9C0 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9C0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946713 Published Annotation - Entrez Gene Database ID: 946713
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75301.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076, IPR017752, IPR000447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0046174 polyol catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000805 glpA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000795 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002049 glpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002167 glpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002379 glpA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002257 glpA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002414 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002358 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001299 glpA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001055 glpA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003086 glpA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003806 glpA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004619 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015033 glpA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003964 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003670 glpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003297 glpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005205 glpA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002301 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008982 glpA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002190 glpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002084 glpA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007003 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006672 glpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006692 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078919 glpA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002599 glpA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002973 glpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006523 glpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005861 glpA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002531 glpA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006974 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000605 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006716 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005241 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006683 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007759 glpA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008218 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005714 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006003 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006936 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007286 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006911 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006164 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007461 glpA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027215 glpA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005078 glpA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007056 glpA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002813 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002109 glpA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002313 glpA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002786 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002697 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002628 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002617 glpA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002544 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002392 glpA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133136 glpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000151 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002528 glpA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000119 glpA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002656 glpA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000992 glpA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004637 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064491 glpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002454 glpA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003218 glpA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002540 glpA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009231 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006589 glpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000636 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002677 glpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006892 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007314 glpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006950 glpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006246 glpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006886 glpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006188 glpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006624 glpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004267 glpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006017 glpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006831 glpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007432 glpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000581 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000580 glpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000706 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007073 glpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005110 glpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006590 glpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006565 glpA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110190 glpA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082292 glpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002823 glpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097304 glpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006997 glpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004501 glpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006825 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000754 glpA CDS
Person Approved Go view Shigella boydii 227 ADV-0002275 glpA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008032 glpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005903 glpA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002802 glpA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073595 glpA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088586 glpA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002481 glpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002521 glpA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003637 VCA0747 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001856 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000658 glpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002528 glpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001686 glpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003179 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241992 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000249 glpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007618 glpA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003551 glpA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128180 glpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008114 glpA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006502 glpA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008498 glpA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007492 glpA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030010 glpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006948 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000179 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004127 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008125 glpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004162 glpA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000227 glpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000266 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004737 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017075 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002996 glpA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20723mutantTn5 InsertionRequest the StrainABE-0007422glpAglpA::Tn5KAN-2 at position 970 in Minus orientation ,- pKD460Blattner Laboratory
FB20724mutantTn5 InsertionRequest the StrainABE-0007422glpAglpA::Tn5KAN-2 at position 970 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2347647 to 2359275
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007386nrdBCDSforward23473842348514Upstream
ABE-0007390yfaECDSforward23485142348768Upstream
ABE-0285506repeat_regionforward23487812348816Upstream
ABE-0007393inaACDScomplement23488222349472Upstream
ABE-0007397yfaHpseudogeneforward23496512349893Upstream
ABE-0007399glpQCDScomplement23499352351011Upstream
ABE-0007401glpTCDScomplement23510162352374Upstream
ABE-0007422glpACDSforward23526472354275Matches
ABE-0007424glpBCDSforward23542652355524Overlaps Downstream
ABE-0007426glpCCDSforward23555212356711Downstream
ABE-0007429rpnECDSforward23569042357803Downstream
ABE-0285064ypaACDSforward23578162358001Downstream
ABE-0007431yfaUCDScomplement23580422358845Downstream
ABE-0007433yfaVCDScomplement23588632360152Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.