Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007424 (glpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007424 showshow history
Names
glpB psi-51 glpC JW2236 ECK2234 b2242
Product
anaerobic glycerol-3-phosphate dehydrogenase subunit B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2354265 2355524 1260 420
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000806
EnteroFam0007424: Trusted threshold=1079.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009158 (IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit) Apr 2008
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Apr 2008
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00890 (PF00890 FAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009158
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009158
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glpB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2236 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym psi-51 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym glpC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2234 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2242 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product anaerobic glycerol-3-phosphate dehydrogenase subunit B Published Annotation - EcoCyc Accession Number: EG10392
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit and FAD/NAD(P)-binding domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007424: Trusted threshold=1079.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000806
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00890 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00890
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit Protein Sequence Similarity - InterPro Domain: IPR009158
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved EC number 1.1.5.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10392 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13033 Published Annotation - Swiss-Prot Accession Number: P13033 Jan 2005
Automated Process Approved db xref ASAP:ABE-0007424 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946733 Published Annotation - Entrez Gene Database ID: 946733
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788575 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75302.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009158
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009158
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000806 glpB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000794 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002028 glpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002150 glpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002381 glpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002258 glpB CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003087 glpB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003807 glpB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004620 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015034 glpB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003963 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003296 glpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005206 glpB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002302 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008981 glpB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002191 glpB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002083 glpB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007002 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006673 glpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006691 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078920 glpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002600 glpB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002974 glpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006524 glpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005862 glpB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002532 glpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006975 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000606 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006717 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005242 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006684 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007760 glpB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008219 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005713 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006004 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006937 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007287 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006910 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006165 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007462 glpB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027216 glpB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005079 glpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007057 glpB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002814 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002110 glpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002314 glpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002787 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002698 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002629 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002618 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176771 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002545 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002393 glpB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133137 glpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000150 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002529 glpB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002657 glpB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004638 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064490 glpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002458 glpB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001119 glpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002539 glpB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009230 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006590 glpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000635 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002678 glpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006893 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007319 glpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006955 glpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006245 glpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006887 glpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006189 glpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006625 glpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004268 glpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006018 glpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006832 glpB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007431 glpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000580 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000579 glpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000705 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007074 glpB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005109 glpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006591 glpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006566 glpB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110195 glpB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082291 glpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002824 glpB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097307 glpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006996 glpB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004500 glpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006826 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000753 glpB CDS
Person Approved Go view Shigella boydii 227 ADV-0002274 glpB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008033 glpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005904 glpB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002803 glpB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073596 glpB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088587 glpB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002482 glpB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002522 glpB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003638 VCA0748 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001857 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000662 glpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002529 glpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001685 glpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003180 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241994 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004671 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000250 glpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007617 glpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003552 glpB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128178 glpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008115 glpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006503 glpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001065 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008499 glpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007493 glpB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030011 glpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006949 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000180 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004125 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008124 glpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004163 glpB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000228 glpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000267 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004735 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20725mutantTn5 InsertionRequest the StrainABE-0007424glpBglpB::Tn5KAN-2 at position 899 in Plus orientation ,- pKD460Blattner Laboratory
FB20726mutantTn5 InsertionRequest the StrainABE-0007424glpBglpB::Tn5KAN-2 at position 899 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2349265 to 2360524
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007393inaACDScomplement23488222349472Upstream
ABE-0007397yfaHpseudogeneforward23496512349893Upstream
ABE-0007399glpQCDScomplement23499352351011Upstream
ABE-0007401glpTCDScomplement23510162352374Upstream
ABE-0007422glpACDSforward23526472354275Overlaps Upstream
ABE-0007424glpBCDSforward23542652355524Matches
ABE-0007426glpCCDSforward23555212356711Overlaps Downstream
ABE-0007429rpnECDSforward23569042357803Downstream
ABE-0285064ypaACDSforward23578162358001Downstream
ABE-0007431yfaUCDScomplement23580422358845Downstream
ABE-0007433yfaVCDScomplement23588632360152Downstream
ABE-0007436rhmDCDScomplement23602092361414Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.