Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007449 (nudI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007449 showshow history
Names
nudI JW2245 ECK2244 yfaO b2251
Product
pyrimidine deoxynucleoside triphosphate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2364554 2364979 426 142
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Apr 2008
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Apr 2008
Automated Process Approved PF00293 (PF00293 NUDIX domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name nudI Published Annotation in EcoGene - EG Number: EG13275
Reference: Escherichia coli K-12 MG1655
Feb 2007
Person Approved synonym yfaO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW2245 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2244 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2251 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product pyrimidine deoxynucleoside triphosphate hydrolase Experimental - PubMed ID: 16766526
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved alternate product name nucleoside triphosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated alternate product name putative enzyme (Nudix hydrolase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00293 NUDIX domain Protein Sequence Similarity - PFAM Model Name: PF00293
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 3.6.-.- Published Annotation - Swiss-Prot Accession Number: P52006 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007449 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13275 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P52006 Published Annotation - Swiss-Prot Accession Number: P52006 Jan 2005
Automated Process Approved db xref GeneID:946740 Published Annotation - Entrez Gene Database ID: 946740
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1788585 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75311.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006351 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002968 nudI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003083 nudI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003873 nudI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002904 nudI CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001787 nudI CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003096 nudI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003816 nudI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003286 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005216 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002312 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008970 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002200 yfaO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002072 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006990 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006679 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006685 YfaO CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078930 nudI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002606 nudI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002980 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006530 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005868 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002542 nudI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006981 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000619 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006730 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005255 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006697 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007773 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008232 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005700 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006017 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006950 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007300 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006897 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006178 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007472 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027225 yfaO CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005090 nudI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007069 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002824 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002119 yfaO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002324 yfaO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002793 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002704 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002639 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002627 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176783 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002551 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002404 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133150 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000136 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002540 yfaO CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002666 yfaO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006600 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000630 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002689 yfaO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006903 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007344 yfaO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006982 yfaO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006235 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006897 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006199 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006630 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004278 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006842 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007421 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000569 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000568 yfaO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000693 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007084 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005098 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006601 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006576 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110218 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082280 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002836 yfaO CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097333 yfaO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006986 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004495 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006836 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003244 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005914 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073602 yfaO CDS
Person Approved Go view Shigella flexneri 301 ABT-0088592 yfaO CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002489 yfaO CDS
Person Approved Go view Shigella sonnei 046 ADD-0002531 yfaO CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017698 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001850 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2359554 to 2369979
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007433yfaVCDScomplement23588632360152Upstream
ABE-0007436rhmDCDScomplement23602092361414Upstream
ABE-0007438yfaXCDScomplement23614292362211Upstream
ABE-0007441yfaYCDScomplement23624312363633Upstream
ABE-0007445yfaZCDScomplement23637332364275Upstream
ABE-0007449nudICDSforward23645542364979Matches
ABE-0007451aisCDScomplement23650182365620Downstream
ABE-0007456arnBCDSforward23659282367067Downstream
ABE-0007458arnCCDSforward23670712368039Downstream
ABE-0007460arnACDSforward23680392370021Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.