Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007456 (arnB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007456 showshow history
Names
arnB yfbE pgbP1 pgbP pmrH JW5372 ECK2246 b2253
Product
UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2365928 2367067 1140 380
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000811
EnteroFam0007456: Trusted threshold=989.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR000653 (IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF01041 (PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name arnB Published Sequence Analysis - PubMed ID: 12429098
Reference: Salmonella Typhimurium LT2 		Jun 2006
Person Uncurated synonym pmrH Published Annotation - PubMed ID: 11035717
Reference: Salmonella Typhimurium ATCC14028 		Jun 2006
Automated Process Approved synonym pgbP Published Annotation - PubMed ID: 15710615
Reference: Yersinia pestis KIM 		Sep 2007
Automated Process Approved synonym yfbE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5372 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pgbP1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2246 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2253 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase Published Annotation - PubMed ID: 12429098
Reference: Salmonella Typhimurium LT2 		Jun 2006
Person Approved alternate product name uridine 5'-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) L-glutamate transaminase Experimental - PubMed ID: 12704196
Reference: Escherichia coli K-12 W3110 		Jun 2006
Protein Family
Person Approved EnteroFam EnteroFam0007456: Trusted threshold=989.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000811
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Protein Sequence Similarity - PFAM Model Name: PF01041
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000653
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.1.- Published Annotation - Swiss-Prot Accession Number: P77690 Feb 2006
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment the coordinates of arnB have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start codon reported in EcoGene, removing 6 codons from the N-terminus Published Annotation in EcoGene - EG Number: EG14089
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Automated Process Approved db xref GI:145693159 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77690 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947375 Published Annotation - Entrez Gene Database ID: 947375
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77690 Published Annotation - Swiss-Prot Accession Number: P77690 Jan 2005
Automated Process Approved db xref ASAP:ABE-0007456 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14089 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function modification of lipid A resulting in increased resistance to polymyxin B Published Annotation - PubMed ID: 11535604
Reference: Escherichia coli K-12 W3110 		Jun 2006
Person Uncurated function catalyzes the transfer of an amino group from L-glutamate to uridine 5'-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate), yielding alpha-ketoglutarate and UDP-4-amino-4-deoxy-L-arabinose Experimental - PubMed ID: 12704196
Reference: Escherichia coli K-12 W3110 		Jun 2006
Automated Process Approved note putative enzyme Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75313.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000811 arnB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002290 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001747 arnB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001756 arnB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001314 arnB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001864 arnB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002382 arnB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002184 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003098 arnB_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003817 arnB_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009461 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016248 arnB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004273 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004157 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299505 arnB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001217 yfbE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002464 arnB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003282 arnB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005218 arnB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002314 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008968 arnB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002202 yfbE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002070 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006987 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006681 arnB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006683 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078932 arnB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002608 arnB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002982 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006532 arnB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005870 arnB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002544 arnB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006983 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000621 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006732 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005257 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006699 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007775 arnB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008234 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005698 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006019 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006952 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007302 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006895 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006180 arnB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007474 arnB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027227 arnB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005092 arnB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007071 arnB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002826 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002121 arnB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002326 arnB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002795 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002706 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002641 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002629 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002553 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002406 arnB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133152 arnB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000134 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002542 yfbE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002083 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002810 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003895 yfbE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009171 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003818 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000640 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003897 arnB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004764 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004118 arnB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004384 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007517 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003690 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286520 arnB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007603 yfbE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063435 arnB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002689 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001970 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000411 arnB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007999 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142941 pbgP1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006602 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002691 arnB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006905 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007351 yfbE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006989 yfbE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006232 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006899 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006201 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006633 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004280 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006034 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006844 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007419 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000567 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000566 arnB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000690 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007086 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005096 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006603 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006578 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110223 arnB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082278 arnB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002839 yfbE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097339 arnB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006984 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004493 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006838 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003637 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266894 CDS
Person Approved Go view Shigella boydii 227 ADV-0002535 arnB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005916 arnB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002818 arnB pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0073604 arnB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088594 arnB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002491 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002533 arnB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003264 pgbP1 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000580 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006441 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000872 arnB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000204 arnB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001500 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239572 arnB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006727 arnB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002136 arnB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004912 arnB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001042 arnB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123340 arnB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008303 arnB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007779 arnB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003204 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008895 arnB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006163 arnB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031614 arnB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008028 arnB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002261 arnB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000862 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006946 arnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005690 arnB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002417 arnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002867 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002155 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004341 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001222 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22839mutantTn5 InsertionRequest the StrainABE-0007456arnBb2253::Tn5(KAN-I-SceI) at position 478 in Minus orientation ,+ pKD46 A to C at position 475 0Blattner Laboratory
FB23412mutantTn5 InsertionRequest the StrainABE-0007456arnBb2253::Tn5KAN-I-SceI at position 478 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2360928 to 2372067
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007436rhmDCDScomplement23602092361414Upstream
ABE-0007438yfaXCDScomplement23614292362211Upstream
ABE-0007441yfaYCDScomplement23624312363633Upstream
ABE-0007445yfaZCDScomplement23637332364275Upstream
ABE-0007449nudICDSforward23645542364979Upstream
ABE-0007451aisCDScomplement23650182365620Upstream
ABE-0007456arnBCDSforward23659282367067Matches
ABE-0007458arnCCDSforward23670712368039Downstream
ABE-0007460arnACDSforward23680392370021Downstream
ABE-0007462arnDCDSforward23700182370908Downstream
ABE-0007464arnTCDSforward23709082372560Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.