Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007460 (arnA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007460 showshow history
Names
arnA pbgP3 SAF yfbG pmrI JW2249 ECK2248 b2255
Product
bifunctional UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2368039 2370021 1983 661
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000813
EnteroFam0007460: Trusted threshold=1729.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Apr 2008
Automated Process Approved IPR005793 (IPR005793 Formyl transferase, C-terminal) Apr 2008
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Apr 2008
Automated Process Approved IPR011034 (IPR011034 Formyl transferase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036477 (IPR036477 Formyl transferase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF00551 (PF00551 Formyl transferase) Jul 2018
Automated Process Approved PF02911 (PF02911 Formyl transferase, C-terminal domain) Jul 2018
Automated Process Approved PF01370 (PF01370 NAD dependent epimerase/dehydratase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name arnA Published Annotation - PubMed ID: 11706007
Reference: Escherichia coli K-12
May 2009
Person Approved synonym ECK2248 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2249 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfbG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Automated Process Approved synonym SAF Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym pmrI Published Annotation - GenBank Accession Number: BX936398
Reference: Yersinia pseudotuberculosis IP32953
Sep 2007
Automated Process Approved synonym pbgP3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b2255 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase Experimental - PubMed ID: 11706007
Reference: Escherichia coli K-12 W3110
Apr 2007
Automated Process Approved alternate product name fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007460: Trusted threshold=1729.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000813
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR005793 Formyl transferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005793
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011034 Formyl transferase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011034
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036477 Formyl transferase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036477
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02911 Formyl transferase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02911
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00551 Formyl transferase Protein Sequence Similarity - PFAM Model Name: PF00551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF01370 NAD dependent epimerase/dehydratase family Protein Sequence Similarity - PFAM Model Name: PF01370
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Automated Process Approved EC number 4.1.1.35 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved EC number 4.1.1.- Published Annotation - Swiss-Prot Accession Number: P77398 Feb 2006
Person Approved EC number 2.1.2.- Published Annotation - Swiss-Prot Accession Number: P77398 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG14091 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77398 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947683 Published Annotation - Entrez Gene Database ID: 947683
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P77398 Published Annotation - Swiss-Prot Accession Number: P77398 Jan 2006
Automated Process Approved db xref GI:1788589 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007460 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note putative transformylase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75315.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000813 arnA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002292 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001788 arnA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001567 arnA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001222 arnA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001938 arnA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002380 arnA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002182 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003100 fmt_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003819 fmt_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009463 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016245 arnA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004271 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004159 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299512 arnA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001218 yfbG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002462 arnA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003280 arnA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005220 arnA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002316 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008966 arnA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002204 yfbG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002068 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006985 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006683 arnA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006681 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078934 arnA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002610 arnA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002984 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006534 arnA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005872 arnA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002546 arnA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006985 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000623 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006734 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005259 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006701 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007777 arnA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008236 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005696 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006021 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006954 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007304 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006893 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006182 arnA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007476 arnA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027229 arnA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005094 arnA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007073 arnA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002123 arnA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002328 yfbG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002797 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002708 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002643 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002631 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176788 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002555 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002408 arnA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133154 arnA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000132 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002544 yfbG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002081 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002812 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003893 yfbG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009173 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003816 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000638 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003895 arnA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004766 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004120 arnA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004386 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007515 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003692 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286518 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007601 yfbG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063433 arnA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004448 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004094 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000409 arnA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007997 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142937 pbgP3 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006604 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006907 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007356 yfbG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006994 yfbG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006230 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006901 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006203 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006635 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004282 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006036 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006846 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007417 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000565 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000564 arnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000688 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007088 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005094 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006605 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006580 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110228 arnA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082276 arnA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002841 yfbG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097345 arnA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006982 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004491 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006840 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003635 CDS
Person Approved Go view Shigella boydii 227 ADV-0002537 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008040 arnA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005918 arnA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002820 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073606 arnA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0088596 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002493 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002535 arnA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000318 arnA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003267 pbgP3 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000578 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006434 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000874 arnA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000206 arnA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001498 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239568 arnA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006725 arnA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002134 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004910 arnA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001044 arnA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123334 arnA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008305 arnA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007777 arnA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003202 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008893 arnA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006161 arnA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031616 arnA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008030 arnA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002259 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000864 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006948 arnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005693 arnA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002415 arnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002865 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002157 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004321 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001224 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22732mutantTn5 InsertionRequest the StrainABE-0007460arnAb2255::Tn5KAN-I-SceI at position 864 in Plus orientation ,+ pKD460Blattner Laboratory
FB23414mutantTn5 InsertionRequest the StrainABE-0007460arnAb2255::Tn5KAN-I-SceI at position 864 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2363039 to 2375021
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007441yfaYCDScomplement23624312363633Upstream
ABE-0007445yfaZCDScomplement23637332364275Upstream
ABE-0007449nudICDSforward23645542364979Upstream
ABE-0007451aisCDScomplement23650182365620Upstream
ABE-0007456arnBCDSforward23659282367067Upstream
ABE-0007458arnCCDSforward23670712368039Overlaps Upstream
ABE-0007460arnACDSforward23680392370021Matches
ABE-0007462arnDCDSforward23700182370908Overlaps Downstream
ABE-0007464arnTCDSforward23709082372560Downstream
ABE-0285065arnECDSforward23725572372892Downstream
ABE-0007466arnFCDSforward23728922373278Downstream
ABE-0007468pmrDCDScomplement23732722373538Downstream
ABE-0007471menECDScomplement23736482375003Downstream
ABE-0007473menCCDScomplement23750002375962Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.