Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007473 (menC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007473 showshow history
Names
menC JW2256 ECK2255 b2261
Product
o-succinylbenzoyl-CoA synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2375000 2375962 963 321
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000817
EnteroFam0007473: Trusted threshold=793; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Apr 2008
Automated Process Approved IPR010196 (IPR010196 o-Succinylbenzoate synthase, MenC type1) Apr 2008
Automated Process Approved IPR029065 (IPR029065 Enolase C-terminal domain-like) Jul 2018
Automated Process Approved IPR036849 (IPR036849 Enolase-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF13378 (PF13378 Enolase C-terminal domain-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name menC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2255 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2256 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2261 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product o-succinylbenzoyl-CoA synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name O-succinylbenzoyl-CoA synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name o-succinylbenzoyl-CoA synthase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007473: Trusted threshold=793; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000817
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010196 o-Succinylbenzoate synthase, MenC type1 Protein Sequence Similarity - InterPro Domain: IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036849 Enolase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13378 Enolase C-terminal domain-like Protein Sequence Similarity - PFAM Model Name: PF13378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029065 Enolase C-terminal domain-like Protein Sequence Similarity - InterPro Domain: IPR029065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.1.- Published Annotation - Swiss-Prot Accession Number: P29208 Feb 2006
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P29208 Published Annotation - Swiss-Prot Accession Number: P29208 Jan 2005
Automated Process Approved db xref GeneID:946734 Published Annotation - Entrez Gene Database ID: 946734
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788596 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P29208 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007473 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11532 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75321.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010196
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000817 menC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001406 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001837 menC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001830 menC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001163 menC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002003 menC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003471 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004559 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001288 menC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001046 menC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003107 menC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003826 menC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008000 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017307 menC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001132 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003744 menC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003273 menC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005227 menC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002323 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008958 menC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002210 menC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002061 menC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006977 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006690 menC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006674 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078941 menC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002617 menC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002991 menC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006541 menC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005879 menC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002553 menC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006992 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000630 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006741 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005266 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006708 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007784 menC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008243 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005689 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006028 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006961 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007311 menC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006886 menC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006189 menC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007483 menC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027237 menC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005101 menC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007080 menC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002836 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002129 menC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002335 menC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002804 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002715 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002650 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002638 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176795 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002562 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002415 menC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133160 menC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000125 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002551 menC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002397 menC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003444 menC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002668 menC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000998 menC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005585 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061460 menC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000679 menC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000306 menC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001110 menC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005787 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143869 menC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006611 menC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000621 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002700 menC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006914 menC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007377 menC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007013 menC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006223 menC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006908 menC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006210 menC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006642 menC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004289 menC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006043 menC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006853 menC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007410 menC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000558 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000557 menC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000681 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007095 menC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005087 menC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006612 menC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006587 menC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110239 menC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082269 menC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002848 menC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097362 menC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006975 menC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004483 menC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006847 menC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002436 menC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268235 menC CDS
Person Approved Go view Shigella boydii 227 ADV-0002543 menC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008049 menC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005925 menC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002826 menC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073613 menC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088602 menC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002500 menC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002541 menC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002047 VC1972 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005110 menC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002177 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004137 menC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000601 menC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003550 menC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002553 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239874 menC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005896 menC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002436 menC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007896 menC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000942 menC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123697 menC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004668 menC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005567 menC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003011 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006886 menC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005459 menC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031352 menC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008240 menC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002554 menC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002321 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005802 menC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005451 menC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002645 menC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003165 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001869 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017123 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002985 menC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23686mutantTn5 InsertionRequest the StrainABE-0007473menCmenC::Tn5KAN-I-SceI at position 880 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2370000 to 2380962
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007460arnACDSforward23680392370021Downstream
ABE-0007462arnDCDSforward23700182370908Downstream
ABE-0007464arnTCDSforward23709082372560Downstream
ABE-0285065arnECDSforward23725572372892Downstream
ABE-0007466arnFCDSforward23728922373278Downstream
ABE-0007468pmrDCDScomplement23732722373538Downstream
ABE-0007471menECDScomplement23736482375003Overlaps Downstream
ABE-0007473menCCDScomplement23750002375962Matches
ABE-0007476menBCDScomplement23759622376819Overlaps Upstream
ABE-0007478menHCDScomplement23768342377592Upstream
ABE-0007482menDCDScomplement23775892379259Upstream
ABE-0007485menFCDScomplement23793482380643Upstream
ABE-0007487elaBCDScomplement23807222381027Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.