Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007482 (menD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007482 showshow history
Names
menD JW5374 ECK2258 b2264
Product
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2377589 2379259 1671 557
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000820
EnteroFam0007482: Trusted threshold=1383.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004433 (IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase) Apr 2008
Automated Process Approved IPR012001 (IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain) Apr 2008
Automated Process Approved IPR032264 (IPR032264 Menaquinone biosynthesis protein MenD, middle domain) Jul 2018
Automated Process Approved IPR011766 (IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding) Jul 2018
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved PF02776 (PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain) Jul 2018
Automated Process Approved PF16582 (PF16582 Middle domain of thiamine pyrophosphate) Jul 2018
Automated Process Approved PF02775 (PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 6337125
Reference: Escherichia coli 		Jan 2009
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011766
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008683 2-oxoglutarate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name menD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5374 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2258 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2264 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase Experimental - PubMed ID: 17760421
Reference: Escherichia coli K-12 		Jan 2009
Person Approved alternate product name SEPHCHC synthase Experimental - PubMed ID: 17760421
Reference: Escherichia coli K-12 		Jan 2009
Automated Process Approved alternate product name 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007482: Trusted threshold=1383.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000820
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Protein Sequence Similarity - InterPro Domain: IPR004433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02776
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02775
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Protein Sequence Similarity - InterPro Domain: IPR011766
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR032264 Menaquinone biosynthesis protein MenD, middle domain Protein Sequence Similarity - InterPro Domain: IPR032264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16582 Middle domain of thiamine pyrophosphate Protein Sequence Similarity - PFAM Model Name: PF16582
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Protein Sequence Similarity - InterPro Domain: IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.2.1.9 Published Annotation - Swiss-Prot Accession Number: P17109
Reference: Escherichia coli K-12 		Jan 2009
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946720 Published Annotation - Entrez Gene Database ID: 946720
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P17109 Published Annotation - Swiss-Prot Accession Number: P17109 Jan 2005
Automated Process Approved db xref GI:1788599 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17109 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007482 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10579 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-oxoglutarate decarboxylase; SHCHC synthase; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75324.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 6337125
Reference: Escherichia coli 		Jan 2009
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011766
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008683 2-oxoglutarate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000820 menD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001409 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001802 menD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001907 menD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001162 menD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002084 menD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003468 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004562 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001285 menD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001043 menD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003110 menD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003829 menD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008003 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017304 menD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001129 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003747 menD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003270 menD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005230 menD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002326 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008955 menD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002213 menD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002058 menD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006974 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006693 menD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006671 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078945 menD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002620 menD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002994 menD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006544 menD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005882 menD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002556 menD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006995 menD CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0000634 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006744 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005269 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006711 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006296 menD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008246 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005686 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006031 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006964 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007314 menD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006883 menD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006192 menD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007486 menD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027240 menD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005104 menD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007083 menD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002839 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0002132 menD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002338 menD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002807 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002718 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002653 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002641 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002565 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002418 menD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133163 menD CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0000121 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002555 menD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002400 menD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003447 menD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002671 menD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001001 menD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005582 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061457 menD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000682 menD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002627 menD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001107 menD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005784 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143874 menD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006614 menD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000618 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002703 menD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006917 menD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007384 menD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007020 menD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006220 menD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006911 menD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006213 menD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006645 menD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004292 menD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006046 menD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006856 menD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007407 menD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000555 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000554 menD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000678 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007098 menD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005084 menD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006615 menD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006590 menD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110245 menD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082266 menD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002851 menD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097371 menD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006972 menD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004480 menD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006851 menD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002433 menD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268233 menD CDS
Person Approved Go view Shigella boydii 227 ADV-0002546 menD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008052 menD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005928 menD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002829 menD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073617 menD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088605 menD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002503 menD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002544 menD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002050 VC1975 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005106 menD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002174 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004129 menD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000603 menD CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0003546 menD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002550 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239877 menD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005899 menD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002439 menD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007899 menD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000939 menD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123704 menD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004671 menD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005570 menD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003014 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006889 menD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005462 menD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031349 menD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008237 menD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002557 menD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002324 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005799 menD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005448 menD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002648 menD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003168 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001866 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017135 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002982 menD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20733mutantTn5 InsertionRequest the StrainABE-0007482menDmenD::Tn5KAN-2 at position 234 in Minus orientation ,- pKD460Blattner Laboratory
FB20734mutantTn5 InsertionRequest the StrainABE-0007482menDmenD::Tn5KAN-2 at position 234 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2372589 to 2384259
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285065arnECDSforward23725572372892Downstream
ABE-0007466arnFCDSforward23728922373278Downstream
ABE-0007468pmrDCDScomplement23732722373538Downstream
ABE-0007471menECDScomplement23736482375003Downstream
ABE-0007473menCCDScomplement23750002375962Downstream
ABE-0007476menBCDScomplement23759622376819Downstream
ABE-0007478menHCDScomplement23768342377592Overlaps Downstream
ABE-0007482menDCDScomplement23775892379259Matches
ABE-0007485menFCDScomplement23793482380643Upstream
ABE-0007487elaBCDScomplement23807222381027Upstream
ABE-0007489elaACDScomplement23810822381543Upstream
ABE-0007496rbnCDSforward23816082382525Upstream
ABE-0007499elaDCDSforward23827132383924Upstream
ABE-0007501yfbKCDScomplement23839952385722Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.