Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007526 (nuoN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007526 showshow history
Names
nuoN JW2271 ECK2270 b2276
Product
NADH:quinone oxidoreductase subunit N
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2390048 2391505 1458 486
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000822
EnteroFam0007526: Trusted threshold=1056.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR001750 (IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Apr 2008
Automated Process Approved IPR010096 (IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2) Apr 2008
Automated Process Approved PF00361 (PF00361 Proton-conducting membrane transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK2270 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2271 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2276 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit N Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain N Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name NADH dehydrogenase I chain N, membrane subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007526: Trusted threshold=1056.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000822
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00361 Proton-conducting membrane transporter Protein Sequence Similarity - PFAM Model Name: PF00361
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 Protein Sequence Similarity - InterPro Domain: IPR010096
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Protein Sequence Similarity - InterPro Domain: IPR001750
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFF0
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2276
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated comment The coordinates of nuoN have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG12093) and by GeneMark.hmm using multiple models, adding 60 codons to the N-terminus. Published Annotation in EcoGene - EG Number: EG12093
Reference: Escherichia coli K-12 MG1655
Apr 2007
Automated Process Approved db xref GeneID:945136 Published Annotation - Entrez Gene Database ID: 945136
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AFF0 Published Annotation - Swiss-Prot Accession Number: P0AFF0 Jan 2006
Automated Process Approved db xref GI:145693160 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007526 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12093 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFF0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note NADH dehydrogenase I chain N; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75336.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010096
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000822 nuoN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000941 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000477 nuoN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000490 nuoN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001195 nuoN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001403 nuoN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001725 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001307 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129436 nuoN CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104881 nuoN CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104274 nuoN CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003060 nuoN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001036 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003117 nuoN CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003835 nuoN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006060 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017335 nuoN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002812 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003753 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303220 nuoN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002554 nuoN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001268 nuoN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003259 nuoN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005240 nuoN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002333 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008946 nuoN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002221 nuoN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002050 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006966 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006702 nuoN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006661 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078954 nuoN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002630 nuoN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003005 nuoN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006553 nuoN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005892 nuoN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002563 nuoN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007003 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000643 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006753 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005278 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006720 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006305 nuoN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008255 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005677 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006040 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006973 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007323 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006874 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006201 nuoN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007495 nuoN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027248 nuoN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005111 nuoN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007098 nuoN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002847 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002142 nuoN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002350 nuoN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002815 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002734 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002665 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002650 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176808 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0002574 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002429 nuoN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133171 nuoN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000112 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002563 nuoN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002404 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003484 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002675 nuoN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001007 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007385 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001980 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001758 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001946 nuoN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002073 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002697 nuoN CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001449 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010459 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001204 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285908 nuoN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005853 nuoN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063301 nuoN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001739 nuoN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002950 nuoN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000258 nuoN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007795 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143884 nuoN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003429 nuoN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006624 nuoN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000611 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002710 nuoN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006926 nuoN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007402 nuoN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007038 nuoN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006213 nuoN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006917 nuoN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006219 nuoN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006651 nuoN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004302 nuoN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006058 nuoN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006862 nuoN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007398 nuoN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000549 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000548 nuoN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000668 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007107 nuoN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005076 nuoN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006621 nuoN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006596 nuoN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110260 nuoN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082260 nuoN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002861 nuoN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097393 nuoN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006966 nuoN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004471 nuoN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002421 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264564 nuoN CDS
Person Approved Go view Shigella boydii 227 ADV-0002555 nuoN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008061 nuoN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005944 nuoN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002844 nuoN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073628 nuoN CDS
Person Approved Go view Shigella flexneri 301 ABT-0088613 nuoN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002512 nuoN CDS
Person Approved Go view Shigella sonnei 046 ADD-0002554 nuoN CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005059 nuoN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002160 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004076 nuoN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000616 nuoN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003777 nuoN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002536 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239907 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005918 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002457 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007919 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000924 nuoN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123747 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004692 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005590 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001304 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006910 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005483 nuoN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031331 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008217 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002575 nuoN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002342 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005782 nuoN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005432 nuoN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002663 nuoN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003186 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001848 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017161 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002976 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2385048 to 2396505
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007501yfbKCDScomplement23839952385722Downstream
ABE-0007506yfbLCDSforward23858602386831Downstream
ABE-0007509yfbMCDSforward23869342387437Downstream
ABE-0007511yfbNCDScomplement23877102388426Downstream
ABE-0007518yfbOCDSforward23886352389057Downstream
ABE-0007524yfbPCDSforward23891162389964Downstream
ABE-0007526nuoNCDScomplement23900482391505Matches
ABE-0007529nuoMCDScomplement23915122393041Upstream
ABE-0285507repeat_regionforward23931312393166Upstream
ABE-0007532nuoLCDScomplement23932052395046Upstream
ABE-0007534nuoKCDScomplement23950432395345Upstream
ABE-0007536nuoJCDScomplement23953422395896Upstream
ABE-0007539nuoICDScomplement23959082396450Upstream
ABE-0007541nuoHCDScomplement23964652397442Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.