Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007529 (nuoM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007529 showshow history
Names
nuoM nuoA JW2272 ECK2271 b2277
Product
NADH:quinone oxidoreductase subunit M
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2391512 2393041 1530 510
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000823
EnteroFam0007529: Trusted threshold=1446.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001750 (IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Apr 2008
Automated Process Approved IPR010227 (IPR010227 NADH-quinone oxidoreductase, chain M/4) Apr 2008
Automated Process Approved IPR003918 (IPR003918 NADH:ubiquinone oxidoreductase) Apr 2008
Automated Process Approved PF00361 (PF00361 Proton-conducting membrane transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoM Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2271 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2272 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nuoA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2277 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit M Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain M Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name NADH dehydrogenase I chain M, membrane subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007529: Trusted threshold=1446.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000823
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00361 Proton-conducting membrane transporter Protein Sequence Similarity - PFAM Model Name: PF00361
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Protein Sequence Similarity - InterPro Domain: IPR001750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003918 NADH:ubiquinone oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR003918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010227 NADH-quinone oxidoreductase, chain M/4 Protein Sequence Similarity - InterPro Domain: IPR010227
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFE8
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2277
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFE8 Published Annotation - Swiss-Prot Accession Number: P0AFE8 Jan 2006
Automated Process Approved db xref GeneID:947731 Published Annotation - Entrez Gene Database ID: 947731
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788613 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFE8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007529 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11773 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain M; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75337.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010227, IPR003918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000823 nuoM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000942 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000277 nuoM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000323 nuoM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001253 nuoM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000700 nuoM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001724 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001308 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129435 nuoM CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104880 nuoM CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104273 nuoM CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003061 nuoM CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001035 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003118 nuoM CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003836 nuoM CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006059 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017334 nuoM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002813 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003754 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303224 nuoM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002555 nuoM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001267 nuoM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003258 nuoM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005241 nuoM CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002334 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008945 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002222 nuoM CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002049 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006965 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006703 nuoM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006660 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078955 nuoM CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002631 nuoM CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003006 nuoM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006554 nuoM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005893 nuoM CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002564 nuoM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007004 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000644 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006754 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005279 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006721 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006306 nuoM CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008256 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005676 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006041 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006974 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007324 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006873 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006202 nuoM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007496 nuoM CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027249 nuoM CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005112 nuoM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007099 nuoM CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002848 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002143 nuoM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002351 nuoM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002816 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002735 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002666 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002651 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176809 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002575 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002430 nuoM CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133172 nuoM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000111 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002564 nuoM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002405 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003485 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002676 nuoM CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001008 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007386 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001981 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001757 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001947 nuoM CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002072 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002698 nuoM CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001448 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010460 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001203 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285907 nuoM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005854 nuoM CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063302 nuoM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001738 nuoM CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002949 nuoM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000259 nuoM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007796 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143885 nuoM CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003428 nuoM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006625 nuoM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000610 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002711 nuoM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006927 nuoM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007406 nuoM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007041 nuoM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006212 nuoM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006918 nuoM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006220 nuoM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006652 nuoM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004303 nuoM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006059 nuoM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006863 nuoM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007397 nuoM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000548 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000547 nuoM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000667 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007108 nuoM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005075 nuoM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006622 nuoM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006597 nuoM CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110262 nuoM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082259 nuoM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002862 nuoM CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097396 nuoM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006965 nuoM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004470 nuoM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008713 nuoM CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002420 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264565 nuoM CDS
Person Approved Go view Shigella boydii 227 ADV-0002556 nuoM CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008062 nuoM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005945 nuoM CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002845 nuoM CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073629 nuoM CDS
Person Approved Go view Shigella flexneri 301 ABT-0088614 nuoM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002513 nuoM CDS
Person Approved Go view Shigella sonnei 046 ADD-0002555 nuoM CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005058 nuoM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002159 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004073 nuoM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000617 nuoM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003776 nuoM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002535 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239922 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005919 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002458 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007920 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000923 nuoM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123763 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004693 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005591 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001306 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006911 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005484 nuoM CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031330 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008216 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002576 nuoM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002343 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005781 nuoM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005431 nuoM CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002664 nuoM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003187 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001847 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017164 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002975 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23687mutantTn5 InsertionRequest the StrainABE-0007529nuoMnuoM::Tn5KAN-I-SceI at position 673 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2386512 to 2398041
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007506yfbLCDSforward23858602386831Downstream
ABE-0007509yfbMCDSforward23869342387437Downstream
ABE-0007511yfbNCDScomplement23877102388426Downstream
ABE-0007518yfbOCDSforward23886352389057Downstream
ABE-0007524yfbPCDSforward23891162389964Downstream
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Matches
ABE-0285507repeat_regionforward23931312393166Upstream
ABE-0007532nuoLCDScomplement23932052395046Upstream
ABE-0007534nuoKCDScomplement23950432395345Upstream
ABE-0007536nuoJCDScomplement23953422395896Upstream
ABE-0007539nuoICDScomplement23959082396450Upstream
ABE-0007541nuoHCDScomplement23964652397442Upstream
ABE-0007543nuoGCDScomplement23974392400165Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.