Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007532 (nuoL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007532 showshow history
Names
nuoL JW2273 ECK2272 b2278
Product
NADH:quinone oxidoreductase subunit L
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2393205 2395046 1842 614
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000824
EnteroFam0007532: Trusted threshold=1662.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003945 (IPR003945 NADH-plastoquinone oxidoreductase, chain 5) Apr 2008
Automated Process Approved IPR001516 (IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal) Apr 2008
Automated Process Approved IPR003916 (IPR003916 (DEPRECATED) NADH-ubiquinone oxidoreductase, chain 5) Apr 2008
Automated Process Approved IPR001750 (IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Apr 2008
Automated Process Approved PF00662 (PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus) Jul 2018
Automated Process Approved PF00361 (PF00361 Proton-conducting membrane transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2272 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2273 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2278 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit L Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain L Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name NADH dehydrogenase I chain L, membrane subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007532: Trusted threshold=1662.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000824
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Protein Sequence Similarity - InterPro Domain: IPR001750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Protein Sequence Similarity - InterPro Domain: IPR001516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003945 NADH-plastoquinone oxidoreductase, chain 5 Protein Sequence Similarity - InterPro Domain: IPR003945
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003916 (DEPRECATED) NADH-ubiquinone oxidoreductase, chain 5 Protein Sequence Similarity - InterPro Domain: IPR003916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00361 Proton-conducting membrane transporter Protein Sequence Similarity - PFAM Model Name: PF00361
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Protein Sequence Similarity - PFAM Model Name: PF00662
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P33607
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2278
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945540 Published Annotation - Entrez Gene Database ID: 945540
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P33607 Published Annotation - Swiss-Prot Accession Number: P33607 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33607 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788614 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007532 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12092 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain L; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75338.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000824 nuoL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000943 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000470 nuoL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000435 nuoL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001252 nuoL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001314 nuoL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001723 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001309 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129434 nuoL CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104879 nuoL CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104272 nuoL CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003062 nuoL CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001034 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003119 nuoL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003837 nuoL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006057 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017333 nuoL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002814 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003755 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303227 nuoL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002556 nuoL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001266 nuoL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003257 nuoL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005242 nuoL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002335 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008944 nuoL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002223 nuoL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002048 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006963 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006704 nuoL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006659 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078956 nuoL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002632 nuoL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003007 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006555 nuoL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005894 nuoL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002565 nuoL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007005 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000645 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006755 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005280 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006722 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006307 nuoL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008257 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005675 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006043 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006975 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007325 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006872 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006203 nuoL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007497 nuoL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027251 nuoL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005113 nuoL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007100 nuoL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002849 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002144 nuoL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002352 nuoL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002817 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002736 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002667 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002652 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176810 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002576 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002431 nuoL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133173 nuoL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000110 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002565 nuoL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002406 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003486 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002677 nuoL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001009 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007387 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001982 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001756 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001948 nuoL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002071 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002699 nuoL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001447 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010461 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001202 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285906 nuoL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005855 nuoL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063303 nuoL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003430 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002947 nuoL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000260 nuoL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007797 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143887 nuoL CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003427 nuoL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006626 nuoL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000609 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002712 nuoL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006928 nuoL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007409 nuoL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007044 nuoL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006211 nuoL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006919 nuoL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006221 nuoL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006653 nuoL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004304 nuoL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006060 nuoL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006864 nuoL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007396 nuoL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000547 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000546 nuoL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000666 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007109 nuoL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005073 nuoL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006623 nuoL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006598 nuoL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110264 nuoL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082258 nuoL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002863 nuoL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097399 nuoL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006964 nuoL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004469 nuoL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008714 nuoL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002419 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264566 nuoL CDS
Person Approved Go view Shigella boydii 227 ADV-0002557 nuoL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008063 nuoL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005946 nuoL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002846 nuoL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073631 nuoL CDS
Person Approved Go view Shigella flexneri 301 ABT-0088615 nuoL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002514 nuoL CDS
Person Approved Go view Shigella sonnei 046 ADD-0002556 nuoL CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005057 nuoL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002158 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004067 nuoL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000618 nuoL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003775 nuoL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002534 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239938 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005920 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002459 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007921 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000922 nuoL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123779 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004694 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005592 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006912 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005485 nuoL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031329 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008215 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002577 nuoL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002344 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005780 nuoL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005430 nuoL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002665 nuoL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003188 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001845 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017167 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002974 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20735mutantTn5 InsertionRequest the StrainABE-0007532nuoLnuoL::Tn5KAN-2 at position 454 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2388205 to 2400046
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007511yfbNCDScomplement23877102388426Downstream
ABE-0007518yfbOCDSforward23886352389057Downstream
ABE-0007524yfbPCDSforward23891162389964Downstream
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Downstream
ABE-0285507repeat_regionforward23931312393166Downstream
ABE-0007532nuoLCDScomplement23932052395046Matches
ABE-0007534nuoKCDScomplement23950432395345Overlaps Upstream
ABE-0007536nuoJCDScomplement23953422395896Upstream
ABE-0007539nuoICDScomplement23959082396450Upstream
ABE-0007541nuoHCDScomplement23964652397442Upstream
ABE-0007543nuoGCDScomplement23974392400165Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.