Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007534 (nuoK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007534 showshow history
Names
nuoK JW2274 ECK2273 b2279
Product
NADH:quinone oxidoreductase subunit K
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2395043 2395345 303 101
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000825
EnteroFam0007534: Trusted threshold=268.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001133 (IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K) Apr 2008
Automated Process Approved IPR003214 (IPR003214 (DEPRECATED) Mitochodrial NADH-ubiquinone oxidoreductase, chain 4L) Apr 2008
Automated Process Approved PF00420 (PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2273 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2274 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2279 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit K Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain K Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007534: Trusted threshold=268.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000825
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Protein Sequence Similarity - PFAM Model Name: PF00420
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003214 (DEPRECATED) Mitochodrial NADH-ubiquinone oxidoreductase, chain 4L Protein Sequence Similarity - InterPro Domain: IPR003214
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K Protein Sequence Similarity - InterPro Domain: IPR001133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.6.-.- Published Annotation - Database Name: EC2GO: GO:0016651
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFE4
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2279
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFE4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFE4 Published Annotation - Swiss-Prot Accession Number: P0AFE4 Jan 2006
Automated Process Approved db xref GI:1788615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007534 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12091 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947580 Published Annotation - Entrez Gene Database ID: 947580
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain K; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75339.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0042773 ATP synthesis coupled electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000825 nuoK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000944 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000538 nuoK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000674 nuoK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000640 nuoK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001528 nuoK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001722 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001310 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129433 nuoK CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104878 nuoK CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104271 nuoK CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003063 nuoK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001033 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003120 nuoK CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003838 nuoK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006056 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017331 nuoK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002815 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003756 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303232 nuoK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002557 nuoK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001265 nuoK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003256 nuoK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005243 nuoK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002336 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008943 nuoK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002224 nuoK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002047 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006962 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006705 nuoK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006658 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078957 nuoK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002633 nuoK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003008 nuoK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006556 nuoK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005895 nuoK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002566 nuoK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007006 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000646 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006756 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005281 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006723 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006308 nuoK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008258 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005674 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006044 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006976 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007326 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006871 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006204 nuoK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007498 nuoK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027252 nuoK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005114 nuoK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007101 nuoK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002850 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002145 nuoK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002353 nuoK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002818 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002737 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002668 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002653 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176811 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002577 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002432 nuoK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133174 nuoK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000109 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002566 nuoK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002407 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003487 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002678 nuoK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001010 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007389 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001983 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001755 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001949 nuoK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002070 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002700 nuoK CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001446 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010462 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285905 nuoK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005856 nuoK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063304 nuoK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001737 nuoK CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000761 nuoK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000261 nuoK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007799 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143888 nuoK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003426 nouK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006627 nuoK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000608 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002713 nuoK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006929 nuoK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007415 nuoK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007049 nuoK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006210 nuoK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006920 nuoK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006222 nuoK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006654 nuoK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004305 nuoK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006061 nuoK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006865 nuoK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007395 nuoK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000546 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000545 nuoK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000665 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007110 nuoK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005072 nuoK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006624 nuoK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006599 nuoK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110267 nuoK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082257 nuoK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002864 nuoK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097401 nuoK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006963 nuoK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004468 nuoK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008715 nuoK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002418 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264567 nuoK CDS
Person Approved Go view Shigella boydii 227 ADV-0002558 nuoK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008064 nuoK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005947 nuoK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002847 nuoK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073632 nuoK CDS
Person Approved Go view Shigella flexneri 301 ABT-0088616 nuoK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002515 nuoK CDS
Person Approved Go view Shigella sonnei 046 ADD-0002557 nuoK CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002289 nuoK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005056 nuoK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002157 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004064 nuoK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000619 nuoK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003774 nuoK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002533 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239955 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005921 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002461 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007922 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000921 nuoK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123798 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004695 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005593 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006913 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005486 nuoK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031328 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008214 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002579 nuoK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002346 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005779 nuoK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005429 nuoK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002666 nuoK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003190 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001844 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017171 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002973 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2390043 to 2400345
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Downstream
ABE-0285507repeat_regionforward23931312393166Downstream
ABE-0007532nuoLCDScomplement23932052395046Overlaps Downstream
ABE-0007534nuoKCDScomplement23950432395345Matches
ABE-0007536nuoJCDScomplement23953422395896Overlaps Upstream
ABE-0007539nuoICDScomplement23959082396450Upstream
ABE-0007541nuoHCDScomplement23964652397442Upstream
ABE-0007543nuoGCDScomplement23974392400165Upstream
ABE-0007545nuoFCDScomplement24002182401555Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.