Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007536 (nuoJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007536 showshow history
Names
nuoJ JW2275 ECK2274 b2280
Product
NADH:quinone oxidoreductase subunit J
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2395342 2395896 555 185
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000826
EnteroFam0007536: Trusted threshold=449.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001457 (IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6) Apr 2008
Automated Process Approved PF00499 (PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001457
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001457
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoJ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2274 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2275 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2280 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit J Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain J Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007536: Trusted threshold=449.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000826
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Protein Sequence Similarity - PFAM Model Name: PF00499
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 Protein Sequence Similarity - InterPro Domain: IPR001457
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFE0
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2280
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFE0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788616 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12090 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946756 Published Annotation - Entrez Gene Database ID: 946756
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFE0 Published Annotation - Swiss-Prot Accession Number: P0AFE0 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain J; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75340.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.46
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001457
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001457
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000826 nuoJ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000945 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000539 nuoJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000627 nuoJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001200 nuoJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001341 nuoJ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001721 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001311 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129432 nuoJ CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104877 nuoJ CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104270 nuoJ CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003064 nuoJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001032 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003121 nuoJ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003839 nuoJ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006055 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017330 nuoJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002816 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003757 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303235 nuoJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002558 nuoJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001264 nuoJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003255 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005244 nuoJ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002337 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008942 nuoJ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002225 nuoJ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002046 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006961 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006706 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006657 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078958 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002634 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003009 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006557 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005896 nuoJ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002567 nuoJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007007 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000647 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006757 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005282 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006724 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006309 nuoJ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008259 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005673 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006045 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006977 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007327 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006870 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006205 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007499 nuoJ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027253 nuoJ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005115 nuoJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007102 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002851 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002146 nuoJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002354 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002819 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002738 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002669 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002654 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176812 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002578 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002433 nuoJ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133175 nuoJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000108 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002567 nuoJ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002408 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003488 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002679 nuoJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001011 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007390 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001984 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001754 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001950 nuoJ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002069 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002701 nuoJ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001445 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010463 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001200 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285904 nuoJ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005857 nuoJ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063305 nuoJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003431 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002946 nuoJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000262 nuoJ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007800 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143890 nuoJ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003425 nuoJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006628 nuoJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000607 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002714 nuoJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006930 nuoJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007419 nuoJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007052 nuoJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006209 nuoJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006921 nuoJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006223 nuoJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006655 nuoJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004306 nuoJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006062 nuoJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006866 nuoJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007394 nuoJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000545 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000544 nuoJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000664 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007111 nuoJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005071 nuoJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006625 nuoJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006600 nuoJ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110269 nuoJ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082256 nuoJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002865 nuoJ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097404 nuoJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006962 nuoJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004467 nuoJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008716 nuoJ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002417 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264568 nuoJ CDS
Person Approved Go view Shigella boydii 227 ADV-0002559 nuoJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008065 nuoJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005948 nuoJ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002848 nuoJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073633 nuoJ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088617 nuoJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002516 nuoJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0002558 nuoJ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002290 nuoJ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005055 nuoJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002156 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004061 nuoJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000620 nuoJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003773 nuoJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002532 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239959 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005922 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002462 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007923 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000920 nuoJ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123803 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004696 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005594 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006914 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005487 nuoJ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031327 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008213 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002580 nuoJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002347 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005778 nuoJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005428 nuoJ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002667 nuoJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003191 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001843 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017173 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002972 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20736mutantTn5 InsertionRequest the StrainABE-0007536nuoJnuoJ::Tn5KAN-2 at position 397 in Plus orientation ,+ pKD460Blattner Laboratory
FB20737mutantTn5 InsertionRequest the StrainABE-0007536nuoJnuoJ::Tn5KAN-2 at position 397 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2390342 to 2400896
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Downstream
ABE-0285507repeat_regionforward23931312393166Downstream
ABE-0007532nuoLCDScomplement23932052395046Downstream
ABE-0007534nuoKCDScomplement23950432395345Overlaps Downstream
ABE-0007536nuoJCDScomplement23953422395896Matches
ABE-0007539nuoICDScomplement23959082396450Upstream
ABE-0007541nuoHCDScomplement23964652397442Upstream
ABE-0007543nuoGCDScomplement23974392400165Upstream
ABE-0007545nuoFCDScomplement24002182401555Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.