Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007539 (nuoI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007539 showshow history
Names
nuoI JW2276 ECK2275 b2281
Product
NADH:quinone oxidoreductase subunit I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2395908 2396450 543 181
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000827
EnteroFam0007539: Trusted threshold=558; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR010226 (IPR010226 NADH-quinone oxidoreductase, chain I) Apr 2008
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Apr 2008
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF12838 (PF12838 4Fe-4S dicluster domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2275 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2276 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2281 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit I Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007539: Trusted threshold=558; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000827
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010226 NADH-quinone oxidoreductase, chain I Protein Sequence Similarity - InterPro Domain: IPR010226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12838 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF12838
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2281
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 1.6.-.- Published Annotation - Database Name: EC2GO: GO:0016651
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFD6
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788617 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946757 Published Annotation - Entrez Gene Database ID: 946757
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFD6 Published Annotation - Swiss-Prot Accession Number: P0AFD6 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFD6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12089 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007539 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain I; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75341.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000827 nuoI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000946 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000410 nuoI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000469 nuoI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001197 nuoI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001358 nuoI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001720 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001312 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129431 nuoI CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104876 nuoI CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104269 nuoI CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003065 nuoI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001031 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003122 nuoI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003840 nuoI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006054 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017329 nuoI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002817 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003758 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303238 nuoI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002559 nuoI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001263 nuoI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003254 nuoI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005245 nuoI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002338 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008941 nuoI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002226 nuoI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002045 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006960 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006707 nuoI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006656 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078959 nuoI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002635 nuoI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003010 nuoI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006558 nuoI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005897 nuoI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002568 nuoI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007008 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000648 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006758 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005283 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006725 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006310 nuoI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008260 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005672 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006046 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006978 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007328 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006869 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006206 nuoI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007500 nuoI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027254 nuoI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005116 nuoI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007103 nuoI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002852 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002147 nuoI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002355 nuoI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002820 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002739 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002670 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002655 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002579 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002434 nuoI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133176 nuoI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000107 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002568 nuoI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002409 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003489 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002680 nuoI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001012 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007391 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001985 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001753 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001951 nuoI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002068 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002702 nuoI CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001444 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010464 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001199 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285903 nuoI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005858 nuoI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063306 nuoI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001736 nuoI CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000762 nuoI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000263 nuoI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007801 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143895 nuoI CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003424 nuoI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006629 nuoI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000606 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002715 nuoI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006931 nuoI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007422 nuoI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007055 nuoI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006208 nuoI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006922 nuoI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006224 nuoI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006656 nuoI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004307 nuoI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006063 nuoI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006867 nuoI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007393 nuoI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000544 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000543 nuoI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000663 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007112 nuoI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005070 nuoI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006626 nuoI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006601 nuoI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110273 nuoI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082255 nuoI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002866 nuoI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097408 nuoI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006961 nuoI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004466 nuoI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008717 nuoI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002416 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264569 nuoI CDS
Person Approved Go view Shigella boydii 227 ADV-0002560 nuoI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008066 nuoI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005949 nuoI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002849 nuoI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073634 nuoI CDS
Person Approved Go view Shigella flexneri 301 ABT-0088618 nuoI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002517 nuoI CDS
Person Approved Go view Shigella sonnei 046 ADD-0002559 nuoI CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002291 nuoI CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005054 nuoI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002155 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004056 nuoI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000621 nuoI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003772 nuoI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002531 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239965 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005923 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002463 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007924 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000919 nuoI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123805 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004697 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005595 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000580 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006915 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005488 nuoI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031326 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008212 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002581 nuoI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002348 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005777 nuoI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005427 nuoI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002668 nuoI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003192 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001842 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017175 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002971 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20738mutantTn5 InsertionRequest the StrainABE-0007539nuoInuoI::Tn5KAN-2 at position 226 in Minus orientation ,+ pKD460Blattner Laboratory
FB20739mutantTn5 InsertionRequest the StrainABE-0007539nuoInuoI::Tn5KAN-2 at position 226 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2390908 to 2401450
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Downstream
ABE-0285507repeat_regionforward23931312393166Downstream
ABE-0007532nuoLCDScomplement23932052395046Downstream
ABE-0007534nuoKCDScomplement23950432395345Downstream
ABE-0007536nuoJCDScomplement23953422395896Downstream
ABE-0007539nuoICDScomplement23959082396450Matches
ABE-0007541nuoHCDScomplement23964652397442Upstream
ABE-0007543nuoGCDScomplement23974392400165Upstream
ABE-0007545nuoFCDScomplement24002182401555Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.