Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007541 (nuoH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007541 showshow history
Names
nuoH JW2277 ECK2276 b2282
Product
NADH:quinone oxidoreductase subunit H
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2396465 2397442 978 326
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000828
EnteroFam0007541: Trusted threshold=947.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001694 (IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H) Apr 2008
Automated Process Approved PF00146 (PF00146 NADH dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2277 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2276 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2282 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit H Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain H Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007541: Trusted threshold=947.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000828
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00146 NADH dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Protein Sequence Similarity - InterPro Domain: IPR001694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFD4
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2282
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFD4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788618 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007541 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946761 Published Annotation - Entrez Gene Database ID: 946761
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12088 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFD4 Published Annotation - Swiss-Prot Accession Number: P0AFD4 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain H; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75342.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001694
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000828 nuoH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000947 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000411 nuoH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000405 nuoH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000639 nuoH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001359 nuoH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001719 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001313 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129430 nuoH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104875 nuoH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104268 nuoH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003066 nuoH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001030 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003123 nuoH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003841 nuoH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006053 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017327 nuoH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002818 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003759 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303243 nuoH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002560 nuoH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001262 nuoH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003253 nuoH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005246 nuoH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002339 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008940 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002227 nuoH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002044 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006959 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006708 nuoH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006655 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078960 nuoH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002636 nuoH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003011 nuoH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006559 nuoH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005898 nuoH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002569 nuoH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007009 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000649 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006759 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005284 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006726 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006311 nuoH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008261 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005671 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006047 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006979 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007329 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006868 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006207 nuoH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007501 nuoH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027255 nuoH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005117 nuoH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007104 nuoH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002853 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002148 nuoH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002356 nuoH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002821 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002740 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002671 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002656 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176814 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002580 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002435 nuoH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133177 nuoH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000106 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002569 nuoH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002410 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003490 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002681 nuoH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001013 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007392 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001986 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001752 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001952 nuoH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002067 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002703 nuoH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001443 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010465 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001198 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285902 nuoH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005859 nuoH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063307 nuoH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001735 nuoH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000763 nuoH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000264 nuoH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007802 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143897 nuoH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003423 nuoH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006630 nuoH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000605 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002716 nuoH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006932 nuoH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007427 nuoH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007060 nuoH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006207 nuoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006923 nuoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006225 nuoH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006657 nuoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004308 nuoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006064 nuoH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006868 nuoH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007392 nuoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000543 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000542 nuoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000662 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007113 nuoH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005069 nuoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006627 nuoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006602 nuoH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110278 nuoH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082254 nuoH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002867 nuoH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097411 nuoH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006960 nuoH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004465 nuoH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008718 nuoH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002415 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264570 nuoH CDS
Person Approved Go view Shigella boydii 227 ADV-0002561 nuoH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008067 nuoH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005950 nuoH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002850 nuoH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073635 nuoH CDS
Person Approved Go view Shigella flexneri 301 ABT-0088619 nuoH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002518 nuoH CDS
Person Approved Go view Shigella sonnei 046 ADD-0002560 nuoH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005053 nuoH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002154 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004051 nuoH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000622 nuoH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003771 nuoH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002530 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239966 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005924 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002464 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007925 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000918 nuoH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123810 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004698 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005596 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000581 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006916 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005489 nuoH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031325 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008211 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002582 nuoH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002349 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005776 nuoH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005426 nuoH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002669 nuoH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003193 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001841 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017179 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002970 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20740mutantTn5 InsertionRequest the StrainABE-0007541nuoHnuoH::Tn5KAN-2 at position 323 in Plus orientation ,- pKD460Blattner Laboratory
FB20741mutantTn5 InsertionRequest the StrainABE-0007541nuoHnuoH::Tn5KAN-2 at position 323 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2391465 to 2402442
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007526nuoNCDScomplement23900482391505Downstream
ABE-0007529nuoMCDScomplement23915122393041Downstream
ABE-0285507repeat_regionforward23931312393166Downstream
ABE-0007532nuoLCDScomplement23932052395046Downstream
ABE-0007534nuoKCDScomplement23950432395345Downstream
ABE-0007536nuoJCDScomplement23953422395896Downstream
ABE-0007539nuoICDScomplement23959082396450Downstream
ABE-0007541nuoHCDScomplement23964652397442Matches
ABE-0007543nuoGCDScomplement23974392400165Overlaps Upstream
ABE-0007545nuoFCDScomplement24002182401555Upstream
ABE-0007547nuoECDScomplement24015522402052Upstream
ABE-0007549nuoCCDScomplement24020552403845Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.