Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007545 (nuoF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007545 showshow history
Names
nuoF nuoB JW2279 ECK2278 b2284
Product
NADH:quinone oxidoreductase subunit F
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2400218 2401555 1338 446
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000830
EnteroFam0007545: Trusted threshold=1342.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011538 (IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain) Apr 2008
Automated Process Approved IPR011537 (IPR011537 NADH ubiquinone oxidoreductase, F subunit) Apr 2008
Automated Process Approved IPR001949 (IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site) Apr 2008
Automated Process Approved IPR019554 (IPR019554 Soluble ligand binding domain) Jul 2018
Automated Process Approved IPR019575 (IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain) Jul 2018
Automated Process Approved IPR037207 (IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily) Jul 2018
Automated Process Approved IPR037225 (IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily) Jul 2018
Automated Process Approved PF01512 (PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit) Jul 2018
Automated Process Approved PF10531 (PF10531 SLBB domain) Jul 2018
Automated Process Approved PF10589 (PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2278 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nuoB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2279 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2284 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit F Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain F Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007545: Trusted threshold=1342.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000830
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Protein Sequence Similarity - PFAM Model Name: PF10589
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037207
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10531 SLBB domain Protein Sequence Similarity - PFAM Model Name: PF10531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037225
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019554 Soluble ligand binding domain Protein Sequence Similarity - InterPro Domain: IPR019554
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF01512
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011537 NADH ubiquinone oxidoreductase, F subunit Protein Sequence Similarity - InterPro Domain: IPR011537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR001949
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR019575
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Protein Sequence Similarity - InterPro Domain: IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P31979
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 1.6.-.- Published Annotation - Database Name: EC2GO: GO:0016651
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2284
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946753 Published Annotation - Entrez Gene Database ID: 946753
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31979 Published Annotation - Swiss-Prot Accession Number: P31979 Jan 2005
Automated Process Approved db xref GI:1788620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31979 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11774 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain F; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75344.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000830 nuoF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000949 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000396 nuoF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000406 nuoF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001199 nuoF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001447 nuoF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001717 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001315 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129428 nuoF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104873 nuoF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104266 nuoF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003068 nuoF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001028 nuoF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003125 nuoF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003843 nuoF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006051 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017325 nuoF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002820 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003761 nuoF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303257 nuoF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002562 nuoF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001260 nuoF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003251 nuoF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005248 nuoF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002341 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008938 nuoF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002229 nuoF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002042 nuoF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006957 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006710 nuoF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006653 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078962 nuoF CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002638 nuoF pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003013 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006561 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005900 nuoF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002571 nuoF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007011 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000651 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006761 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005286 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006728 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006313 nuoF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008263 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005669 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006049 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006981 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007331 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006866 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006209 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007503 nuoF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027257 nuoF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005119 nuoF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007106 nuoF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002855 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002150 nuoF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002358 nuoF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002823 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002742 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002673 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002658 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176818 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002582 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002437 nuoF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133179 nuoF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000104 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002571 nuoF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002412 nuoF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003492 nuoF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002683 nuoF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001016 nuoF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007394 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001988 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001750 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001954 nuoF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002065 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002705 nuoF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001441 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010467 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001196 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285900 nuoF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005861 nuoF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063309 nuoF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001733 nuoF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002944 nuoF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000266 nuoF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007804 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143902 nuoF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003421 nuoF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006632 nuoF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000603 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002718 nuoF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006934 nuoF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007441 nuoF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007073 nuoF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006205 nuoF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006925 nuoF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006227 nuoF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006659 nuoF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004310 nuoF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006066 nuoF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006870 nuoF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007390 nuoF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000541 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000540 nuoF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000660 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007115 nuoF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005067 nuoF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006629 nuoF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006604 nuoF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110289 nuoF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082252 nuoF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002869 nuoF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097417 nuoF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006958 nuoF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004463 nuoF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008720 nuoF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002413 nuoF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264572 nuoF CDS
Person Approved Go view Shigella boydii 227 ADV-0002563 nuoF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008069 nuoF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005952 nuoF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002852 nuoF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073637 nuoF CDS
Person Approved Go view Shigella flexneri 301 ABT-0088621 nuoF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002520 nuoF CDS
Person Approved Go view Shigella sonnei 046 ADD-0002562 nuoF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005051 nuoF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002152 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004041 nuoF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000624 nuoF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003769 nuoF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002528 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239976 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005926 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002466 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007927 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000916 nuoF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123827 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004700 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005598 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006918 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005491 nuoF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031323 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008209 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002584 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002351 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005774 nuoF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005424 nuoF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002671 nuoF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003195 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001839 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017190 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002968 nuoF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20744mutantTn5 InsertionRequest the StrainABE-0007545nuoFnuoF::Tn5KAN-2 at position 642 in Plus orientation ,+ pKD460Blattner Laboratory
FB20745mutantTn5 InsertionRequest the StrainABE-0007545nuoFnuoF::Tn5KAN-2 at position 642 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2395218 to 2406555
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007534nuoKCDScomplement23950432395345Downstream
ABE-0007536nuoJCDScomplement23953422395896Downstream
ABE-0007539nuoICDScomplement23959082396450Downstream
ABE-0007541nuoHCDScomplement23964652397442Downstream
ABE-0007543nuoGCDScomplement23974392400165Downstream
ABE-0007545nuoFCDScomplement24002182401555Matches
ABE-0007547nuoECDScomplement24015522402052Overlaps Upstream
ABE-0007549nuoCCDScomplement24020552403845Upstream
ABE-0007551nuoBCDScomplement24039512404613Upstream
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.