Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007547 (nuoE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007547 showshow history
Names
nuoE JW2280 ECK2279 b2285
Product
NADH:quinone oxidoreductase subunit E
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2401552 2402052 501 167
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000831
EnteroFam0007547: Trusted threshold=463.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002023 (IPR002023 NADH-quinone oxidoreductase subunit E-like) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF01257 (PF01257 Thioredoxin-like [2Fe-2S] ferredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002023
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2279 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2280 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2285 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit E Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain E Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007547: Trusted threshold=463.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000831
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Protein Sequence Similarity - PFAM Model Name: PF01257
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002023 NADH-quinone oxidoreductase subunit E-like Protein Sequence Similarity - InterPro Domain: IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFD1
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2285
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFD1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946746 Published Annotation - Entrez Gene Database ID: 946746
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0007547 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12086 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFD1 Published Annotation - Swiss-Prot Accession Number: P0AFD1 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain E; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75345.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002023
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000831 nuoE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000950 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001306 nuoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001224 nuoE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000799 nuoE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001406 nuoE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001716 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001316 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129427 nuoE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104872 nuoE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104265 nuoE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003069 nuoE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001027 nuoE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003126 nuoE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003844 nuoE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006050 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017324 nuoE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002821 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003762 nuoE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303261 nuoE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002563 nuoE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001259 nuoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003250 nuoE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005249 nuoE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002342 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008937 nuoE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002230 nuoE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002041 nuoE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006956 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006711 nuoE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006652 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078963 nuoE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002640 nuoE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003014 nuoE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006562 nuoE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005901 nuoE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002572 nuoE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007012 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000652 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006762 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005287 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006729 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006314 nuoE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008264 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005668 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006050 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006982 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007332 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006865 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006210 nuoE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007504 nuoE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027258 nuoE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005120 nuoE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007107 nuoE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002856 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002151 nuoE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002359 nuoE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002824 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002743 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002674 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002659 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176819 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002583 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002438 nuoE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133180 nuoE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000103 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002572 nuoE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002413 nuoE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003493 nuoE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002684 nuoE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001017 nuoE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007395 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001989 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001749 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001955 nuoE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002064 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002706 nuoE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001440 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010468 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001195 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285899 nuoE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005862 nuoE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063310 nuoE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001721 nuoE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000765 nuoE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000267 nuoE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007805 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143903 nuoE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003420 nuoE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006633 nuoE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000602 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002719 nuoE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006935 nuoE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007445 nuoE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007077 nuoE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006204 nuoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006926 nuoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006228 nuoE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006660 nuoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004311 nuoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006067 nuoE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006871 nuoE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007389 nuoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000540 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000539 nuoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000659 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007116 nuoE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005066 nuoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006630 nuoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006605 nuoE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110293 nuoE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082251 nuoE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002870 nuoE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097419 nuoE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006957 nuoE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004462 nuoE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008721 nuoE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002412 nuoE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264573 nuoE CDS
Person Approved Go view Shigella boydii 227 ADV-0002564 nuoE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008070 nuoE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005953 nuoE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002853 nuoE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073638 nuoE CDS
Person Approved Go view Shigella flexneri 301 ABT-0088622 nuoE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002521 nuoE CDS
Person Approved Go view Shigella sonnei 046 ADD-0002563 nuoE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002295 nuoE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005050 nuoE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002151 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004038 nuoE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000625 nuoE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003768 nuoE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002527 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239977 nuoE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002467 nuoE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000915 nuoE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123831 nuoE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031322 nuoE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002585 nuoE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002352 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002672 nuoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003196 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001838 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017195 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002967 nuoE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20746mutantTn5 InsertionRequest the StrainABE-0007547nuoEnuoE::Tn5KAN-2 at position 230 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2396552 to 2407052
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007541nuoHCDScomplement23964652397442Downstream
ABE-0007543nuoGCDScomplement23974392400165Downstream
ABE-0007545nuoFCDScomplement24002182401555Overlaps Downstream
ABE-0007547nuoECDScomplement24015522402052Matches
ABE-0007549nuoCCDScomplement24020552403845Upstream
ABE-0007551nuoBCDScomplement24039512404613Upstream
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.