Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007549 (nuoC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007549 showshow history
Names
nuoC nuoCD nuoD JW5375 ECK2280 b2286
Product
NADH:quinone oxidoreductase subunit CD
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2402055 2403845 1791 597
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000832
EnteroFam0007549: Trusted threshold=1831.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001268 (IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit) Apr 2008
Automated Process Approved IPR010219 (IPR010219 (DEPRECATED) NADH dehydrogenase I, subunit D) Apr 2008
Automated Process Approved IPR014655 (IPR014655 (DEPRECATED) NADH:quinone oxidoreductase, fused subunit NuoCD) Apr 2008
Automated Process Approved IPR010218 (IPR010218 NADH dehydrogenase, subunit C) Apr 2008
Automated Process Approved IPR014364 (IPR014364 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit/NADH:quinone oxidoreductase, subunit NuoCD) Apr 2008
Automated Process Approved IPR001135 (IPR001135 NADH-quinone oxidoreductase, subunit D) Apr 2008
Automated Process Approved IPR014029 (IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site) Apr 2008
Automated Process Approved IPR022885 (IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H) Jul 2018
Automated Process Approved IPR029014 (IPR029014 [NiFe]-hydrogenase, large subunit) Jul 2018
Automated Process Approved IPR037232 (IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily) Jul 2018
Automated Process Approved PF00329 (PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit) Jul 2018
Automated Process Approved PF00346 (PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268, IPR001135, IPR010218, IPR022885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym nuoCD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym nuoD Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved synonym JW5375 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2280 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2286 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit CD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain C, D Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name NADH:ubiquinone oxidoreductase, fused CD subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007549: Trusted threshold=1831.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000832
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Protein Sequence Similarity - InterPro Domain: IPR001268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010219 (DEPRECATED) NADH dehydrogenase I, subunit D Protein Sequence Similarity - InterPro Domain: IPR010219
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029014 [NiFe]-hydrogenase, large subunit Protein Sequence Similarity - InterPro Domain: IPR029014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Protein Sequence Similarity - InterPro Domain: IPR037232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF00329
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF00346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Protein Sequence Similarity - InterPro Domain: IPR022885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR014029
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014655 (DEPRECATED) NADH:quinone oxidoreductase, fused subunit NuoCD Protein Sequence Similarity - InterPro Domain: IPR014655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010218 NADH dehydrogenase, subunit C Protein Sequence Similarity - InterPro Domain: IPR010218
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014364 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, fused large subunit/NADH:quinone oxidoreductase, subunit NuoCD Protein Sequence Similarity - InterPro Domain: IPR014364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001135 NADH-quinone oxidoreductase, subunit D Protein Sequence Similarity - InterPro Domain: IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P33599
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 1.6.-.- Published Annotation - Database Name: EC2GO: GO:0016651
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2286
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment N-terminal sequencing gives a start site four codons upstream (g.2401879) of the one reported in PMID:11997136 (g.2401867) Experimental - PubMed ID: 7607227
Reference: Escherichia coli B 		Aug 2007
Person Uncurated comment The coordinates of nuoC have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site determined by N-terminal sequencing, removing 4 codons from the N-terminus. Experimental - PubMed ID: 11997136
Reference: Escherichia coli 		Aug 2007
Person Approved db xref UniProtKB:P33599 Published Annotation - Swiss-Prot Accession Number: P33599 Jan 2005
Automated Process Approved db xref GI:145693162 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007549 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33599 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946759 Published Annotation - Entrez Gene Database ID: 946759
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG12084 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note NADH dehydrogenase I chain C, D; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75346.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268, IPR001135, IPR010218, IPR022885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001268
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000832 nuoC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000951 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000442 nuoC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000461 nuoC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001326 nuoC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001295 nuoC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001715 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001317 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129426 nuoCD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104871 nuoCD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104264 nuoCD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003070 nuoC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001026 nuoD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003127 nuoC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003845 nuoC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006049 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017323 nuoC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002822 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003763 nuoD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303264 nuoC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002564 nuoCD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001258 nuoC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003249 nuoC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005250 nuoC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002343 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008936 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002231 nuoC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002040 nuoD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006955 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006712 nuoC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006651 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078964 nuoC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002641 nuoC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003015 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006563 nuoC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005902 nuoC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002573 nuoC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007013 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000653 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006763 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005288 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006730 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006315 nuoC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008265 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005667 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006051 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006983 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007333 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006864 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006211 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007505 nuoC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027259 nuoC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005121 nuoC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007108 nuoC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002857 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002152 nuoC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002360 nuoC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002825 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002744 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002675 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002660 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002584 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002439 nuoC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133181 nuoC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000102 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002573 nuoC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002414 nuoD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003494 nuoD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002685 nuoC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001018 nuoD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007396 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001990 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001748 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001956 nuoC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002063 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002707 nuoC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001439 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010469 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001194 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285898 nuoC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005863 nuoC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063311 nuoC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001731 nuoC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000766 nuoC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000268 nuoC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007806 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143905 nuoC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003419 nuoCD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006634 nuoC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000601 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002720 nuoC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006936 nuoC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007448 nuoC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007080 nuoC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006203 nuoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006927 nuoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006229 nuoC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006661 nuoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004312 nuoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006068 nuoC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006872 nuoC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007388 nuoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000539 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000538 nuoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000658 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007117 nuoC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005065 nuoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006631 nuoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006606 nuoC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110297 nuoC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082250 nuoC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002871 nuoC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097422 nuoC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006956 nuoC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004461 nuoC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008722 nuoC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002411 nuoD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264574 nuoCD CDS
Person Approved Go view Shigella boydii 227 ADV-0002565 nuoC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008071 nuoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005954 nuoC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002854 nuoC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073639 nuoC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088623 nuoC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002522 nuoC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002564 nuoC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002296 nuoC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005049 nuoC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002150 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004034 nuoD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000626 nuoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003767 nuoC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002526 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239978 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005928 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002468 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007929 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000914 nuoC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123834 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004702 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005600 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006920 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005493 nuoCD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031321 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008207 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002586 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002353 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005772 nuoCD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005422 nuoCD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002673 nuoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003197 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001837 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017200 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002966 nuoD CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0007549 nuoC lambda repressor assay Doodle - bnumber: b2286 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22605mutantTn5 InsertionRequest the StrainABE-0007549nuoCnuoC::Tn5KAN-I-SceI at position 369 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2397055 to 2408845
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007541nuoHCDScomplement23964652397442Downstream
ABE-0007543nuoGCDScomplement23974392400165Downstream
ABE-0007545nuoFCDScomplement24002182401555Downstream
ABE-0007547nuoECDScomplement24015522402052Downstream
ABE-0007549nuoCCDScomplement24020552403845Matches
ABE-0007551nuoBCDScomplement24039512404613Upstream
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
ABE-0007560alaACDSforward24075612408778Upstream
ABE-0285508repeat_regionforward24087922408810Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.