Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007551 (nuoB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007551 showshow history
Names
nuoB JW5875 ECK2281 b2287
Product
NADH:quinone oxidoreductase subunit B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2403951 2404613 663 221
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000833
EnteroFam0007551: Trusted threshold=676.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR014406 (IPR014406 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB) Apr 2008
Automated Process Approved IPR014659 (IPR014659 (DEPRECATED) NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB) Apr 2008
Automated Process Approved IPR006137 (IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit) Apr 2008
Automated Process Approved IPR006138 (IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit) Apr 2008
Automated Process Approved PF01058 (PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137, IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW5875 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2281 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2287 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit B Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007551: Trusted threshold=676.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000833
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Protein Sequence Similarity - InterPro Domain: IPR006138
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Protein Sequence Similarity - InterPro Domain: IPR006137
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR014406 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB Protein Sequence Similarity - InterPro Domain: IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR014659 (DEPRECATED) NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB Protein Sequence Similarity - InterPro Domain: IPR014659
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF01058
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2287
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFC7
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFC7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788624 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AFC7 Published Annotation - Swiss-Prot Accession Number: P0AFC7 Jan 2006
Automated Process Approved db xref EcoGene:EG12083 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007551 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946738 Published Annotation - Entrez Gene Database ID: 946738
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note NADH dehydrogenase I chain B; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75347.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137, IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000833 nuoB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000952 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000405 nuoB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000480 nuoB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000800 nuoB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001357 nuoB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001714 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001318 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129425 nuoB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104870 nuoB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104263 nuoB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003071 nuoB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001025 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003128 nuoB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003846 nuoB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006048 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017322 nuoB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002823 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003764 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303268 nuoB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002565 nuoB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001257 nuoB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003248 nuoB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005251 nuoB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002344 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008935 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002232 nuoB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002039 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006954 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006713 nuoB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006650 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078965 nuoB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002642 nuoB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003016 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006564 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005903 nuoB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002574 nuoB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007014 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000654 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006764 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005289 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006731 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006316 nuoB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008266 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005666 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006052 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006984 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007334 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006863 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006212 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007506 nuoB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027260 nuoB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005122 nuoB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007109 nuoB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002858 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002153 nuoB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002361 nuoB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002826 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002745 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002676 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002661 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002585 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002440 nuoB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133182 nuoB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000101 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002574 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002415 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003495 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002686 nuoB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001019 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007397 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001991 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001747 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001957 nuoB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002062 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002708 nuoB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001438 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010470 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001193 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285897 nuoB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005864 nuoB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063312 nuoB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001741 nuoB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000767 nuoB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000269 nuoB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007807 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143907 nuoB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003418 nuoB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006635 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000600 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002721 nuoB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006937 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007452 nuoB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007084 nuoB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006202 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006928 nuoB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006230 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006662 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004313 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006069 nuoB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006873 nuoB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007387 nuoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000538 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000537 nuoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000657 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007118 nuoB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005064 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006632 nuoB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006607 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110301 nuoB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082249 nuoB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002872 nuoB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097426 nuoB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006955 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004460 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008723 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002410 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264575 nuoB CDS
Person Approved Go view Shigella boydii 227 ADV-0002566 nuoB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008072 nuoB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005955 nuoB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002855 nuoB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073640 nuoB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088624 nuoB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002523 nuoB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002565 nuoB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005048 nuoB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002149 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004030 nuoB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000627 nuoB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003766 nuoB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002525 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239979 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005929 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002469 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007930 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000913 nuoB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123838 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004703 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005601 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001080 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006921 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005494 nuoB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031320 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008206 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002587 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002354 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005771 nuoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005421 nuoB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002674 nuoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003198 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001836 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017204 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20747mutantTn5 InsertionRequest the StrainABE-0007551nuoBnuoB::Tn5KAN-2 at position 608 in Plus orientation ,+ pKD460Blattner Laboratory
FB20748mutantTn5 InsertionRequest the StrainABE-0007551nuoBnuoB::Tn5KAN-2 at position 608 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2398951 to 2409613
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007543nuoGCDScomplement23974392400165Downstream
ABE-0007545nuoFCDScomplement24002182401555Downstream
ABE-0007547nuoECDScomplement24015522402052Downstream
ABE-0007549nuoCCDScomplement24020552403845Downstream
ABE-0007551nuoBCDScomplement24039512404613Matches
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
ABE-0007560alaACDSforward24075612408778Upstream
ABE-0285508repeat_regionforward24087922408810Upstream
ABE-0007563yfbRCDSforward24088622409461Upstream
ABE-0285509repeat_regionforward24094962409514Upstream
ABE-0007565yfbSCDScomplement24095202411352Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.