Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007553 (nuoA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007553 showshow history
Names
nuoA JW2283 ECK2282 b2288
Product
NADH:quinone oxidoreductase subunit A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2404629 2405072 444 148
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000834
EnteroFam0007553: Trusted threshold=383.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000440 (IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3) Apr 2008
Automated Process Approved PF00507 (PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000440
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000440
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nuoA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK2282 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2283 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2288 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH:quinone oxidoreductase subunit A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Approved alternate product name NADH dehydrogenase I chain A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007553: Trusted threshold=383.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000834
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Protein Sequence Similarity - PFAM Model Name: PF00507
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 Protein Sequence Similarity - InterPro Domain: IPR000440
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated EC number 1.6.5.11 Published Annotation - Swiss-Prot Accession Number: P0AFC3
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated EC number 7.1.1.2 Published Annotation - KEGG Database Name: eco:b2288
Reference: Escherichia coli K-12 MG1655
Dec 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.1 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.130 (transport; substrate; Na+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFC3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788625 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007553 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12082 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946764 Published Annotation - Entrez Gene Database ID: 946764
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AFC3 Published Annotation - Swiss-Prot Accession Number: P0AFC3 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note NADH dehydrogenase I chain A; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75348.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.46
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000440
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008137 NADH dehydrogenase (ubiquinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000440
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000834 nuoA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000953 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000462 nuoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000732 nuoA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001027 nuoA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001270 nuoA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001713 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001319 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129424 nuoA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104869 nuoA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104262 nuoA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003129 ndhC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003847 ndhC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006047 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046520 nuoA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003765 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303271 nuoA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002566 nuoA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001256 nuoA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003247 nuoA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005252 nuoA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002345 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008934 nuoA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002233 nuoA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002038 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006953 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006714 nuoA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006649 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078966 nuoA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002643 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003017 nuoA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006565 nuoA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005904 nuoA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002575 nuoA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007015 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000655 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006765 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005290 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006732 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006317 nuoA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008267 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005665 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006053 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006985 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007335 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006862 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006213 nuoA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007507 nuoA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027261 nuoA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005123 ndhC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007110 nuoA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002859 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002154 nuoA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002362 nuoA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002827 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002746 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002677 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002662 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176823 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002586 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002441 nuoA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133183 nuoA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000100 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002575 nuoA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003496 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002687 nuoA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001020 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007398 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001992 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001746 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001958 nuoA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002061 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002709 nuoA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001437 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010471 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001192 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285896 nuoA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005865 nuoA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063313 nuoA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001729 nuoA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000768 nuoA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000270 nuoA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007808 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143909 nuoA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003417 nuoA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006636 nuoA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000599 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002722 nuoA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006938 nuoA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007456 nuoA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007087 nuoA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006201 nuoA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006929 nuoA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006231 nuoA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006663 nuoA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004314 nuoA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006070 nuoA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006874 nuoA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007386 nuoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000537 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000536 nuoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000656 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007119 nuoA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005063 nuoA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006633 nuoA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006608 nuoA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110305 nuoA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082248 nuoA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002873 nuoA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097429 nuoA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006954 nuoA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004459 nuoA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008724 nuoA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002409 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264576 nuoA CDS
Person Approved Go view Shigella boydii 227 ADV-0002567 nuoA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008073 nuoA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005956 nuoA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002856 nuoA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073641 nuoA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088625 nuoA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002524 nuoA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002566 nuoA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005046 nuoA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002148 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004026 nuoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000628 ndhC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003885 nuoA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002524 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239980 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005930 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002470 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007931 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000912 nuoA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123841 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004704 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005602 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006922 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005495 nuoA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031319 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008205 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002588 nuoA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002355 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005770 nuoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005420 nuoA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002675 nuoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003199 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001834 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017207 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002964 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20749mutantTn5 InsertionRequest the StrainABE-0007553nuoAnuoA::Tn5KAN-2 at position 293 in Plus orientation ,- pKD460Blattner Laboratory
FB20750mutantTn5 InsertionRequest the StrainABE-0007553nuoAnuoA::Tn5KAN-2 at position 293 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2399629 to 2410072
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007543nuoGCDScomplement23974392400165Downstream
ABE-0007545nuoFCDScomplement24002182401555Downstream
ABE-0007547nuoECDScomplement24015522402052Downstream
ABE-0007549nuoCCDScomplement24020552403845Downstream
ABE-0007551nuoBCDScomplement24039512404613Downstream
ABE-0007553nuoACDScomplement24046292405072Matches
ABE-0007555lrhACDScomplement24057032406641Upstream
ABE-0007560alaACDSforward24075612408778Upstream
ABE-0285508repeat_regionforward24087922408810Upstream
ABE-0007563yfbRCDSforward24088622409461Upstream
ABE-0285509repeat_regionforward24094962409514Upstream
ABE-0007565yfbSCDScomplement24095202411352Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.