Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007560 (alaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007560 showshow history
Names
alaA aat yfbQ JW2287 ECK2284 b2290
Product
glutamate-pyruvate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2407561 2408778 1218 406
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000835
EnteroFam0007560: Trusted threshold=1237.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR001176 (IPR001176 (DEPRECATED) 1-aminocyclopropane-1-carboxylate synthase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alaA Experimental - PubMed ID: 20729367
Reference: Escherichia coli K-12 		Jan 2011
Person Approved synonym ECK2284 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym aat Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Automated Process Approved synonym yfbQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2287 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2290 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamate-pyruvate aminotransferase Experimental - PubMed ID: 20729367
Reference: Escherichia coli K-12 		Jan 2011
Automated Process Approved alternate product name valine-pyruvate aminotransferase 2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007560: Trusted threshold=1237.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000835
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001176 (DEPRECATED) 1-aminocyclopropane-1-carboxylate synthase Protein Sequence Similarity - InterPro Domain: IPR001176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.6.1.2 Published Annotation - Web Resource URL: http://BioCyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7184
Reference: Escherichia coli K-12 		Jan 2011
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14101 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A959 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946772 Published Annotation - Entrez Gene Database ID: 946772
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A959 Published Annotation - Swiss-Prot Accession Number: P0A959 Jan 2006
Automated Process Approved db xref ASAP:ABE-0007560 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788627 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Amino acid biosynthesis: Alanine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative aminotransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75350.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000835 alaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000954 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000750 alaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000731 alaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001025 alaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000417 alaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001710 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001321 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003074 yfbQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001021 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003131 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003849 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006044 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020595 alaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002827 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003767 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303280 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002569 aat CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001254 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003244 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005255 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002347 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008931 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002236 yfbQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002036 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006951 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006717 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006646 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078968 alaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002645 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003019 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006568 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005907 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002577 yfbQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007017 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000658 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006767 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005292 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006735 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006320 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008269 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005662 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006055 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006987 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007338 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006859 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006217 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007509 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027263 yfbQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005126 alaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007112 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002861 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002156 yfbQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002366 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002830 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002749 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002680 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002664 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176825 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002588 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002444 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133185 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000097 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002579 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002418 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003505 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002689 yfbQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001024 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007401 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001994 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001744 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001960 yfbQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002057 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002711 yfbQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001435 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010474 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001190 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285894 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005867 yfbQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063320 yfbQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001743 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001941 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000273 yfbQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007810 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143913 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001809 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006640 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000596 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002726 yfbQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007466 yfbQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007097 yfbQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006197 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006933 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006235 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006667 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004318 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006074 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006878 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007382 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000534 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000533 yfbQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000651 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007123 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005059 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006636 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006612 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110313 yfbQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082245 yfbQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002878 yfbQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097444 yfbQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006949 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004455 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008727 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002406 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266070 CDS
Person Approved Go view Shigella boydii 227 ADV-0002569 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008075 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005959 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002858 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073643 yfbQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088627 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002526 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002568 yfbQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002052 VC1977 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005040 yfbQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002146 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004018 aat CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000630 aat_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003883 yfbQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002522 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239987 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005933 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002473 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007935 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000909 yfbQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123853 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004708 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005605 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006925 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005499 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031317 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008202 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002591 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002358 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005416 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002677 yfbQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003203 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001832 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017215 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002962 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22606mutantTn5 InsertionRequest the StrainABE-0007560alaAb2290::Tn5KAN-I-SceI at position 838 in Minus orientation ,+ pKD465Blattner Laboratory
FB23418mutantTn5 InsertionRequest the StrainABE-0007560alaAb2290::Tn5KAN-I-SceI at position 838 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2402561 to 2413778
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007549nuoCCDScomplement24020552403845Upstream
ABE-0007551nuoBCDScomplement24039512404613Upstream
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
ABE-0007560alaACDSforward24075612408778Matches
ABE-0285508repeat_regionforward24087922408810Downstream
ABE-0007563yfbRCDSforward24088622409461Downstream
ABE-0285509repeat_regionforward24094962409514Downstream
ABE-0007565yfbSCDScomplement24095202411352Downstream
ABE-0007567hxpACDScomplement24114392412089Downstream
ABE-0007571yfbUCDScomplement24121002412594Downstream
ABE-0007575yfbVCDScomplement24126772413132Downstream
ABE-0007579ackACDSforward24134702414672Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.