Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007563 (yfbR) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007563 showshow history
Names
yfbR JW2288 ECK2285 b2291
Product
nucleotidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2408862 2409461 600 200
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000836
EnteroFam0007563: Trusted threshold=538.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003607 (IPR003607 HD/PDEase domain) Apr 2008
Automated Process Approved IPR006674 (IPR006674 HD domain) Apr 2008
Automated Process Approved IPR039356 (IPR039356 5'-deoxynucleotidase YfbR/HDDC2) Jul 2018
Automated Process Approved PF13023 (PF13023 HD domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO molecular function GO:0002953 5'-deoxynucleotidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR039356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfbR Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2288 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2285 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2291 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product nucleotidase Experimental - PubMed ID: 15808744
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name 5'-nucleotidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name deoxyribonucleoside 5'-monophosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007563: Trusted threshold=538.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000836
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006674 HD domain Protein Sequence Similarity - InterPro Domain: IPR006674
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR039356 5'-deoxynucleotidase YfbR/HDDC2 Protein Sequence Similarity - InterPro Domain: IPR039356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13023 HD domain Protein Sequence Similarity - PFAM Model Name: PF13023
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003607 HD/PDEase domain Protein Sequence Similarity - InterPro Domain: IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.5 Published Annotation - Swiss-Prot Accession Number: P76491 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76491 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788628 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76491 Published Annotation - Swiss-Prot Accession Number: P76491 Jan 2006
Automated Process Approved db xref ASAP:ABE-0007563 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946771 Published Annotation - Entrez Gene Database ID: 946771
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG14102 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative alpha helix protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75351.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO molecular function GO:0002953 5'-deoxynucleotidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR039356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000836 yfbR CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000955 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001191 yfbR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000892 yfbR CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001026 yfbR CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001435 yfbR CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001709 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001322 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003075 yfbR CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001020 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003132 yfbR CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003850 yfbR CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006043 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020594 yfbR CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002829 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003768 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303282 yfbR CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002570 yfbR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001253 yfbR CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003243 yfbR CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005256 yfbR CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002348 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008930 yfbR CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002238 yfbR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002035 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006950 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006718 yfbR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006645 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078969 yfbR CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002646 yfbR CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003020 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006569 yfbR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005908 yfbR CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002578 yfbR CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007018 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000659 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006768 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005293 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006736 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006321 yfbR CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008270 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005661 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006056 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006988 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007339 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006858 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006218 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007510 yfbR CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027264 yfbR CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005127 yfbR CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007113 yfbR CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002862 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002157 yfbR CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002367 yfbR CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002831 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002750 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002681 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002665 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176826 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002589 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002445 yfbR CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133186 yfbR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000096 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002580 yfbR CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002419 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003506 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002690 yfbR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001025 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007402 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001995 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001743 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001961 yfbR CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002056 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002712 yfbR CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001434 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010475 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001189 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285893 yfbR CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005868 yfbR CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063321 yfbR CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001744 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001942 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000274 yfbR CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007811 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143914 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006641 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000595 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002727 yfbR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006944 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007468 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007099 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006934 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006236 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006668 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006075 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006879 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007381 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000533 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000532 yfbR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000650 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007124 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005058 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006637 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006613 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110315 yfbR CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082244 yfbR CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002879 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097447 yfbR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006948 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004454 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008728 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002405 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266071 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008076 yfbR CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005960 yfbR CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002859 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073644 yfbR CDS
Person Approved Go view Shigella flexneri 301 ABT-0088628 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002527 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002569 yfbR CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002053 VC1978 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005038 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002145 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004016 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000631 yfbR CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003882 yfbR CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003114 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239988 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005934 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002474 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007936 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000908 yfbR CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123855 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004709 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005606 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004004 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006926 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005500 yfbR CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031316 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008201 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002592 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002359 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005766 yfbR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005415 yfbR CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002678 yfbR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003204 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001831 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017221 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002961 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0007563 yfbR lambda repressor assay Doodle - bnumber: b2291 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22607mutantTn5 InsertionRequest the StrainABE-0007563yfbRb2291::Tn5KAN-I-SceI at position 417 in Minus orientation ,+ pKD465Blattner Laboratory
FB23419mutantTn5 InsertionRequest the StrainABE-0007563yfbRb2291::Tn5KAN-I-SceI at position 417 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2403862 to 2414461
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007551nuoBCDScomplement24039512404613Upstream
ABE-0007553nuoACDScomplement24046292405072Upstream
ABE-0007555lrhACDScomplement24057032406641Upstream
ABE-0007560alaACDSforward24075612408778Upstream
ABE-0285508repeat_regionforward24087922408810Upstream
ABE-0007563yfbRCDSforward24088622409461Matches
ABE-0285509repeat_regionforward24094962409514Downstream
ABE-0007565yfbSCDScomplement24095202411352Downstream
ABE-0007567hxpACDScomplement24114392412089Downstream
ABE-0007571yfbUCDScomplement24121002412594Downstream
ABE-0007575yfbVCDScomplement24126772413132Downstream
ABE-0007579ackACDSforward24134702414672Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.