Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007567 (hxpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007567 showshow history
Names
hxpA yfbT JW5376 ECK2287 b2293
Product
hexitol phosphatase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2411439 2412089 651 217
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000838
EnteroFam0007567: Trusted threshold=529.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Apr 2008
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Apr 2008
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13419 (PF13419 Haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name hxpA Published Annotation - PubMed ID: 27941785
Reference: Escherichia coli K-12 		Dec 2018
Person Approved synonym ECK2287 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfbT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5376 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2293 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product hexitol phosphatase A Experimental - PubMed ID: 27941785
Reference: Escherichia coli K-12 		Dec 2018
Automated Process Approved alternate product name sugar phosphatas Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name sugar phosphatase Experimental - PubMed ID: 16990279
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Approved alternate product name predicted hydrolase or phosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative phosphatase, contains a phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative phosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007567: Trusted threshold=529.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000838
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13419 Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF13419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved EC number 3.1.3.23 Experimental - PubMed ID: 16990279
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P77625 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77625 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082080 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946777 Published Annotation - Entrez Gene Database ID: 946777
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77625 Published Annotation - Swiss-Prot Accession Number: P77625 Jan 2005
Automated Process Approved db xref EcoGene:EG14104 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007567 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75353.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000838 hxpA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000957 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001594 yfbT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001582 hxpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001713 yfbT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001695 hxpA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001706 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001324 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003077 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001018 yfbT CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003134 yfbT CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003852 yfbT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006040 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020591 hxpA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002831 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003770 yfbT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303288 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002576 yfbT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001248 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003241 yfbT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005258 yfbT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002350 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008928 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002240 yfbT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002033 yfbT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006948 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006720 yfbT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006643 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078971 yfbT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002648 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003022 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006571 yfbT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005910 yfbT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002580 yfbT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007020 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000661 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006770 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005295 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006738 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006323 yfbT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008272 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005659 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006058 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006990 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007341 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006856 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006220 yfbT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007512 yfbT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027266 yfbT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005129 yfbT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007115 yfbT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002864 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002158 yfbT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002369 yfbT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002833 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002752 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002683 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002667 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176828 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002591 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002447 yfbT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133188 yfbT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000094 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002582 yfbT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002421 yfbT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003508 yfbT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002692 yfbT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001027 yfbT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007405 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001996 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001742 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002055 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002713 yfbT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001433 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010476 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001188 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285892 yfbT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005869 yfbT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063323 yfbT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001726 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000771 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000276 yfbT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007813 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006643 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000593 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002730 yfbT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006946 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007479 yfbT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007108 yfbT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006194 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006936 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006238 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006670 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004321 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006077 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006881 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007379 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000531 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000530 yfbT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000648 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007126 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005056 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006639 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006615 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110323 yfbT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082242 yfbT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002881 yfbT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097451 yfbT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006946 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004452 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008730 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002403 yfbT CDS
Person Approved Go view Shigella boydii 227 ADV-0002575 yfbT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008078 yfbT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002861 yfbT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073646 yfbT CDS
Person Approved Go view Shigella flexneri 301 ABT-0088630 yfbT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002529 yfbT CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005035 yfbT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002897 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004003 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000634 yfbT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003880 yfbT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003116 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240002 yfbT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005936 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002476 yfbT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007938 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000905 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123876 yfbT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004711 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005608 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004006 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006928 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005502 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031314 yfbT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008199 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002594 yfbT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002361 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005764 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005412 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002681 yfbT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003208 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001827 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017228 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002959 yfbT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22608mutantTn5 InsertionRequest the StrainABE-0007567hxpAyfbT::Tn5KAN-I-SceI at position 506 in Minus orientation ,+ pKD465Blattner Laboratory
FB23420mutantTn5 InsertionRequest the StrainABE-0007567hxpAyfbT::Tn5KAN-I-SceI at position 506 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2406439 to 2417089
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007555lrhACDScomplement24057032406641Downstream
ABE-0007560alaACDSforward24075612408778Downstream
ABE-0285508repeat_regionforward24087922408810Downstream
ABE-0007563yfbRCDSforward24088622409461Downstream
ABE-0285509repeat_regionforward24094962409514Downstream
ABE-0007565yfbSCDScomplement24095202411352Downstream
ABE-0007567hxpACDScomplement24114392412089Matches
ABE-0007571yfbUCDScomplement24121002412594Upstream
ABE-0007575yfbVCDScomplement24126772413132Upstream
ABE-0007579ackACDSforward24134702414672Upstream
ABE-0007582ptaCDSforward24147472416891Upstream
ABE-0007585yfcCCDSforward24170812418601Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.