Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007579 (ackA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007579 showshow history
Names
ackA JW2293 ECK2290 b2296
Product
acetate/propionate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2413470 2414672 1203 401
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000841
EnteroFam0007579: Trusted threshold=1171.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004372 (IPR004372 Acetate/propionate kinase) Apr 2008
Automated Process Approved IPR000890 (IPR000890 Aliphatic acid kinase, short-chain) Apr 2008
Automated Process Approved PF00871 (PF00871 Acetokinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006082 organic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0045733 acetate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042867 pyruvate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016774 phosphotransferase activity, carboxyl group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ackA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2293 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2290 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2296 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acetate/propionate kinase Protein Sequence Similarity - InterPro Domain: IPR004372
Reference: Escherichia coli K-12 MG1655 		Oct 2022
Person Uncurated alternate product name acetate kinase A (propionate kinase 2) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name acetate kinase A and propionate kinase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Automated Process Approved alternate product name acetate kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0007579: Trusted threshold=1171.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000841
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00871 Acetokinase family Protein Sequence Similarity - PFAM Model Name: PF00871
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004372 Acetate/propionate kinase Protein Sequence Similarity - InterPro Domain: IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000890 Aliphatic acid kinase, short-chain Protein Sequence Similarity - InterPro Domain: IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.2.1 Published Annotation - Swiss-Prot Accession Number: P0A6A3 Feb 2006
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.28 (metabolism; central intermediary metabolism; pyruvate oxidation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.29 (metabolism; central intermediary metabolism; acetate catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.30 (metabolism; central intermediary metabolism; threonine catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946775 Published Annotation - Entrez Gene Database ID: 946775
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788633 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10027 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6A3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007579 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6A3 Published Annotation - Swiss-Prot Accession Number: P0A6A3 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetate kinase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0042867 - pyruvate catabolic process; GO_process: GO:0045733 - acetate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75356.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation regulated by creC (ASAP:ABE-0014430); activation of ackA expression under nutrient limiting conditions was not observed in a creC null mutant, as determined by RT-PCR Experimental - PubMed ID: 11350954
Reference: Escherichia coli K-12 		Sep 2007
Person Uncurated regulation regulated by nutritional source; expression of ackA is down-regulated in complex medium compared to glucose minimal medium, as determined by RT-PCR Experimental - PubMed ID: 11350954
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006082 organic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0045733 acetate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042867 pyruvate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000890
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016774 phosphotransferase activity, carboxyl group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004372
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000841 ackA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000960 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000270 ackA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000301 ackA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000317 ackA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001229 ackA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001703 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001327 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129445 ackA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104890 ackA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104284 ackA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003080 ackA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001015 ackA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003137 ackA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003855 ackA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006037 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020586 ackA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002834 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003774 ackA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303293 ackA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002579 ackA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001246 ackA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003238 ackA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005261 ackA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002353 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008924 ackA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002243 ackA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002030 ackA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006945 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006724 ackA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006639 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078975 ackA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002652 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003026 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006575 ackA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005914 ackA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002583 ackA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007024 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000665 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006774 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005299 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006742 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006327 ackA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008276 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005655 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006062 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006994 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007344 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006852 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006224 ackA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007516 ackA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027269 ackA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005133 ackA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007119 ackA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002868 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002161 ackA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002372 ackA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002836 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002755 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002686 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002671 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176832 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002595 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002451 ackA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133191 ackA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000090 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002586 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002426 ackA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003511 ackA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002696 ackA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001031 ackA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007408 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001999 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001739 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001965 ackA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002051 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002717 ackA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001430 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010479 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001185 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285889 ackA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005872 ackA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063326 ackA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001724 ackA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001943 ackA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000279 ackA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007816 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143922 ackA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006647 ackA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000590 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002733 ackA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006950 ackA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007487 ackA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007115 ackA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006190 ackA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006940 ackA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006242 ackA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006674 ackA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004325 ackA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006081 ackA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006885 ackA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007375 ackA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000528 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000527 ackA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000643 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007130 ackA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005052 ackA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006643 ackA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006619 ackA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110329 ackA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082239 ackA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002886 ackA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097460 ackA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006942 ackA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004448 ackA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008734 ackA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002400 ackA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266525 ackA CDS
Person Approved Go view Shigella boydii 227 ADV-0002578 ackA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008081 ackA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005966 ackA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002864 ackA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073649 ackA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088633 ackA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002532 ackA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002574 ackA CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001664 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001166 VC1098 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135675 ackA CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000341 ackA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005030 ackA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002900 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003993 ack CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000637 ack CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003877 ackA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003119 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240010 ackA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005939 ackA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002479 ackA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007941 ackA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000901 ackA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123881 ackA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004714 ackA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005611 ackA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004009 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006931 ackA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005505 ackA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031311 ackA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008196 ackA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002597 ackA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002364 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005761 ackA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005409 ackA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002685 ackA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003211 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001824 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017237 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002956 ackA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2408470 to 2419672
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007560alaACDSforward24075612408778Upstream
ABE-0285508repeat_regionforward24087922408810Upstream
ABE-0007563yfbRCDSforward24088622409461Upstream
ABE-0285509repeat_regionforward24094962409514Upstream
ABE-0007565yfbSCDScomplement24095202411352Upstream
ABE-0007567hxpACDScomplement24114392412089Upstream
ABE-0007571yfbUCDScomplement24121002412594Upstream
ABE-0007575yfbVCDScomplement24126772413132Upstream
ABE-0007579ackACDSforward24134702414672Matches
ABE-0007582ptaCDSforward24147472416891Downstream
ABE-0007585yfcCCDSforward24170812418601Downstream
ABE-0007587yfcDCDScomplement24186342419176Downstream
ABE-0007589yfcECDScomplement24192342419788Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.