Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007600 (yfcG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007600 showshow history
Names
yfcG JW2299 ECK2296 b2302
Product
disulfide reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2420621 2421268 648 216
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004045 (IPR004045 Glutathione S-transferase, N-terminal) Apr 2008
Automated Process Approved IPR004046 (IPR004046 Glutathione S-transferase, C-terminal) Apr 2008
Automated Process Approved IPR010987 (IPR010987 Glutathione S-transferase, C-terminal-like) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR036282 (IPR036282 Glutathione S-transferase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00043 (PF00043 Glutathione S-transferase, C-terminal domain) Jul 2018
Automated Process Approved PF02798 (PF02798 Glutathione S-transferase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfcG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2296 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2299 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2302 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product disulfide reductase Experimental - PubMed ID: 19537707
Reference: Escherichia coli K-12 		Feb 2021
Person Uncurated alternate product name glutathione S-transferase Experimental - PubMed ID: 17018556
Reference: Escherichia coli K-12 BW25113 		Feb 2021
Automated Process Approved alternate product name GSH-dependent disulfide bond oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00043 Glutathione S-transferase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02798 Glutathione S-transferase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02798
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036282 Glutathione S-transferase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004046 Glutathione S-transferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010987 Glutathione S-transferase, C-terminal-like Protein Sequence Similarity - InterPro Domain: IPR010987
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004045 Glutathione S-transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR004045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.5.1.18 Protein Sequence Similarity - InterPro Domain: IPR004046
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946763 Published Annotation - Entrez Gene Database ID: 946763
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77526 Published Annotation - Swiss-Prot Accession Number: P77526 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77526 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14110 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788640 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative S-transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75362.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001883 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002394 yfcG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002397 yfcG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001296 yfcG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002345 yfcG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001696 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001339 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003086 yfcG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001001 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003143 yfcG_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003861 yfcG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006033 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020869 yfcG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002838 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003785 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003226 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005267 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002359 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008918 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002249 yfcG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002024 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006939 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009153 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006633 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078982 yfcG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002658 yfcG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003032 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006581 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005920 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002589 yfcG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007030 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000671 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006781 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005305 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006748 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006333 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008282 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005649 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006068 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007000 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007350 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006846 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006230 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007522 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027275 yfcG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005139 yfcG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007125 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002167 yfcG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002378 yfcG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002842 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002761 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002692 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002677 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176839 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002601 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002457 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133197 yfcG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000084 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002593 yfcG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002435 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003523 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002701 yfcG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001036 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007412 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063331 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001722 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001946 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000284 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007820 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144086 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006659 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000577 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002747 yfcG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006963 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007521 yfcG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007149 yfcG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006178 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006952 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006254 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006687 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004338 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006093 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006898 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007363 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000516 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000515 yfcG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000630 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007142 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005040 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006655 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006632 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0110363 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082227 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002899 yfcG CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097496 yfcG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006930 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004436 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007206 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002389 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265142 CDS
Person Approved Go view Shigella boydii 227 ADV-0002584 yfcG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008087 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005472 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002871 yfcG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073655 yfcG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088639 yfcG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002538 yfcG CDS
Person Approved Go view Shigella sonnei 046 ADD-0002580 yfcG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002319 yfcG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003474 VCA0584 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005656 yfcG CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017293 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002944 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22613mutantTn5 InsertionRequest the StrainABE-0007600yfcGyfcG::Tn5KAN-I-SceI at position 569 in Minus orientation ,+ pKD465Blattner Laboratory
FB23425mutantTn5 InsertionRequest the StrainABE-0007600yfcGyfcG::Tn5KAN-I-SceI at position 569 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2415621 to 2426268
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007582ptaCDSforward24147472416891Upstream
ABE-0007585yfcCCDSforward24170812418601Upstream
ABE-0007587yfcDCDScomplement24186342419176Upstream
ABE-0007589yfcECDScomplement24192342419788Upstream
ABE-0007593yfcFCDScomplement24198412420485Upstream
ABE-0007600yfcGCDSforward24206212421268Matches
ABE-0007603folXCDSforward24213252421687Downstream
ABE-0007605yfcHCDSforward24217082422601Downstream
ABE-0007607rpnBCDScomplement24226492423539Downstream
ABE-0007610hisPCDScomplement24237362424509Downstream
ABE-0007613hisMCDScomplement24245172425233Downstream
ABE-0007615hisQCDScomplement24252302425916Downstream
ABE-0007617hisJCDScomplement24260062426788Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.