Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007610 (hisP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007610 showshow history
Names
hisP JW2303 ECK2300 b2306
Product
ATP-binding component of an ABC superfamily histidine/lysine/arginine/ornithine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2423736 2424509 774 258
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000846
EnteroFam0007610: Trusted threshold=714.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2300 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2303 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2306 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily histidine/lysine/arginine/ornithine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ATP-binding component of histidine transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name histidine and lysine/arginine/ornithine transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name histidine/lysine/arginine/ornithine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007610: Trusted threshold=714.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000846
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.16 (metabolism; building block biosynthesis; amino acids; histidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.89 (transport; substrate; histidine/lysine/arginine/ornithine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07109 Published Annotation - Swiss-Prot Accession Number: P07109 Jan 2005
Automated Process Approved db xref GeneID:946789 Published Annotation - Entrez Gene Database ID: 946789
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788644 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07109 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007610 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of histidine transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate; GO_process: GO:0006526 - arginine biosynthetic process; GO_process: GO:0000105 - histidine biosynthetic process; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75366.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0000105 histidine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000846 hisP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000149 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001300 hisP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001861 hisP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001732 hisP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001902 hisP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001694 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002213 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003089 hisP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000992 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003148 hisP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003865 hisP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006031 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020872 hisP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002840 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003789 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303331 hisP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002592 hisP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001235 hisP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003222 hisP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005271 hisP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002363 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008914 hisP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002253 hisP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002020 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006935 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009157 hisP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010094 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078985 hisP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002662 hisP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006585 hisP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005925 hisP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002593 hisP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007034 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000675 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006787 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005309 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006752 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006337 hisP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008286 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005645 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006072 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007004 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007354 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006842 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006234 hisP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007526 hisP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027279 hisP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005143 hisP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007129 hisP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002878 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002171 hisP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002382 hisP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002846 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002765 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002696 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002680 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176843 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002656 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002461 hisP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133201 hisP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000080 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002597 hisP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002440 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003526 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002705 hisP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001040 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007414 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002008 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001730 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001982 hisP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002035 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002732 hisP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001413 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010490 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001180 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285872 hisP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005877 hisP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063334 hisP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001747 hisP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001948 hisP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000287 hisP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007823 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001864 hisP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006661 hisP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000575 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002749 hisP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006965 hisP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007527 hisP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007155 hisP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006176 hisP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006954 hisP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006256 hisP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006689 hisP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004340 hisP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006095 hisP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006900 hisP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007361 hisP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000514 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000513 hisP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000628 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007144 hisP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005038 hisP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006657 hisP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006634 hisP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110367 hisP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082225 hisP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002901 hisP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097500 hisP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006928 hisP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004434 hisP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007208 hisP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002386 CDS
Person Approved Go view Shigella boydii 227 ADV-0002591 hisP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008093 hisP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005466 hisP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002878 hisP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073659 hisP CDS
Person Approved Go view Shigella flexneri 301 ABT-0088643 hisP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002542 hisP CDS
Person Approved Go view Shigella sonnei 046 ADD-0002586 hisP CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002323 hisP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001938 VC1864 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002411 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003957 hisP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000649 hisP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003204 hisP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002902 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240034 hisP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004455 hisP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002489 hisP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008310 hisP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000625 hisP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124620 hisP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004262 hisP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005480 hisP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003755 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006313 hisP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005517 hisP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031298 hisP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007359 hisP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002609 hisP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002375 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005749 hisP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005397 hisP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002695 hisP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003221 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001814 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017317 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002938 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2418736 to 2429509
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007587yfcDCDScomplement24186342419176Downstream
ABE-0007589yfcECDScomplement24192342419788Downstream
ABE-0007593yfcFCDScomplement24198412420485Downstream
ABE-0007600yfcGCDSforward24206212421268Downstream
ABE-0007603folXCDSforward24213252421687Downstream
ABE-0007605yfcHCDSforward24217082422601Downstream
ABE-0007607rpnBCDScomplement24226492423539Downstream
ABE-0007610hisPCDScomplement24237362424509Matches
ABE-0007613hisMCDScomplement24245172425233Upstream
ABE-0007615hisQCDScomplement24252302425916Upstream
ABE-0007617hisJCDScomplement24260062426788Upstream
ABE-0007621argTCDScomplement24270092427791Upstream
ABE-0007628ubiXCDScomplement24280572428626Upstream
ABE-0007631purFCDScomplement24287212430238Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.