Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007615 (hisQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007615 showshow history
Names
hisQ JW2305 ECK2302 b2308
Product
membrane component of an ABC superfamily histidine/lysine/arginine/ornithine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2425230 2425916 687 229
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000848
EnteroFam0007615: Trusted threshold=593.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010065 (IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain) Apr 2008
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR030199 (IPR030199 Histidine transport system permease protein HisQ) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0003333 amino acid transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030199
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2305 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2302 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2308 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily histidine/lysine/arginine/ornithine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name histidine and lysine/arginine/ornithine transport system (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name histidine/lysine/arginine/ornithine transporter permease subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name histidine transport system permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007615: Trusted threshold=593.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000848
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Protein Sequence Similarity - InterPro Domain: IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR030199 Histidine transport system permease protein HisQ Protein Sequence Similarity - InterPro Domain: IPR030199
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.89 (transport; substrate; histidine/lysine/arginine/ornithine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12125 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P52094 Published Annotation - Swiss-Prot Accession Number: P52094 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52094 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788646 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947235 Published Annotation - Entrez Gene Database ID: 947235
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note histidine transport system permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75368.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0003333 amino acid transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030199
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000848 hisQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000151 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001496 hisQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001895 hisQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001733 hisQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001910 hisQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001692 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002215 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003091 hisQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000990 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003150 hisQ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003867 hisQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006029 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014704 hisQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002842 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003791 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303339 hisQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002594 hisQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001233 hisQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003220 hisQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005273 hisQ CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008912 hisQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002255 hisQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002018 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006933 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009159 hisQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010092 HisQ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078987 hisQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002664 hisQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003041 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006587 hisQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005927 hisQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002595 hisQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007036 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000677 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006789 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005311 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006754 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006339 hisQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008288 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005643 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006074 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007006 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007356 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006840 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006236 hisQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007528 hisQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027281 hisQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005145 hisQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007131 hisQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002880 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002173 hisQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002384 hisQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002848 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002767 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002698 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002682 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176845 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002658 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002463 hisQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133203 hisQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000078 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002599 hisQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002442 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003528 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002707 hisQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001042 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007416 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002010 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001728 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001984 hisQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002033 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002734 hisQ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001411 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010492 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001178 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285870 hisQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005879 hisQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063336 hisQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001765 hisQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004073 hisQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000289 hisQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007825 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004210 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006663 hisQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000573 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002751 hisQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006967 hisQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007535 hisQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007162 hisQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006174 hisQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006956 hisQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006258 hisQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006691 hisQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004342 hisQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006097 hisQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006902 hisQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007359 hisQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000512 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000511 hisQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000626 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007146 hisQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005036 hisQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006659 hisQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006636 hisQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110374 hisQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082223 hisQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002903 hisQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097504 hisQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006926 hisQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004432 hisQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007210 hisQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002384 CDS
Person Approved Go view Shigella boydii 227 ADV-0002593 hisQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008095 hisQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005464 hisQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002880 hisQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073661 hisQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088645 hisQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002544 hisQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0002588 hisQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002325 hisQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001936 VC1862 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002413 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003948 hisQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000651 hisQ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003202 hisQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002904 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240039 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004457 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002491 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008312 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000623 hisQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124606 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004260 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005478 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003757 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006311 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005519 hisQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031296 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007357 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002611 hisQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002377 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005747 hisQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005395 hisQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002697 hisQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003223 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001812 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017334 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002936 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2420230 to 2430916
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007593yfcFCDScomplement24198412420485Downstream
ABE-0007600yfcGCDSforward24206212421268Downstream
ABE-0007603folXCDSforward24213252421687Downstream
ABE-0007605yfcHCDSforward24217082422601Downstream
ABE-0007607rpnBCDScomplement24226492423539Downstream
ABE-0007610hisPCDScomplement24237362424509Downstream
ABE-0007613hisMCDScomplement24245172425233Overlaps Downstream
ABE-0007615hisQCDScomplement24252302425916Matches
ABE-0007617hisJCDScomplement24260062426788Upstream
ABE-0007621argTCDScomplement24270092427791Upstream
ABE-0007628ubiXCDScomplement24280572428626Upstream
ABE-0007631purFCDScomplement24287212430238Upstream
ABE-0007633cvpACDScomplement24302752430763Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.