Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007645 (folC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007645 showshow history
Names
folC dedC JW2312 ECK2309 b2315
Product
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2431674 2432942 1269 423
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000853
EnteroFam0007645: Trusted threshold=1036.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Apr 2008
Automated Process Approved IPR001645 (IPR001645 Folylpolyglutamate synthetase) Apr 2008
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Apr 2008
Automated Process Approved IPR036615 (IPR036615 Mur ligase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036565 (IPR036565 Mur-like, catalytic domain superfamily) Jul 2018
Automated Process Approved PF08245 (PF08245 Mur ligase middle domain) Jul 2018
Automated Process Approved PF02875 (PF02875 Mur ligase family, glutamate ligase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004326 tetrahydrofolylpolyglutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name folC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2309 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dedC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2312 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2315 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional folylpolyglutamate synthase/dihydrofolate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name bifunctional folylpolyglutamate synthase/ dihydrofolate synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name folylpolyglutamate synthase; has both dihydrofolate synthase and formylTHF polyglutamate synthase activity Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007645: Trusted threshold=1036.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000853
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036615 Mur ligase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036615
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036565 Mur-like, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001645 Folylpolyglutamate synthetase Protein Sequence Similarity - InterPro Domain: IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08245 Mur ligase middle domain Protein Sequence Similarity - PFAM Model Name: PF08245
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02875 Mur ligase family, glutamate ligase domain Protein Sequence Similarity - PFAM Model Name: PF02875
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.2.17 Published Annotation - Swiss-Prot Accession Number: P08192 Feb 2006
Person Approved EC number 6.3.2.12 Published Annotation - Swiss-Prot Accession Number: P08192 Feb 2006
Automated Process Uncurated EC number 6.-.-.- Published Annotation - Database Name: EC2GO: GO:0016874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945451 Published Annotation - Entrez Gene Database ID: 945451
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08192 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08192 Published Annotation - Swiss-Prot Accession Number: P08192 Jan 2005
Automated Process Approved db xref GI:1788654 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10327 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75375.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004326 tetrahydrofolylpolyglutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001645
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000853 folC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000967 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000159 folC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000142 folC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000568 folC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000658 folC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001686 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001351 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129437 folC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104883 folC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104276 folC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003099 folC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000983 folC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003158 folC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003874 folC CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006022 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017782 folC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002848 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003798 folC CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0303362 folC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002601 folC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001226 folC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003213 folC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005280 folC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002372 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008904 folC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002262 folC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002011 folC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006924 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009166 folC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010395 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078997 folC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002671 folC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003048 folC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006594 folC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005934 folC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002602 folC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007043 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006796 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005318 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006761 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006346 folC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008295 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005636 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006081 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007013 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007363 folC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006833 folC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006243 folC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007535 folC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027289 folC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005152 folC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007139 folC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002887 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002180 folC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002391 folC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002855 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002774 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002705 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002691 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176852 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002665 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002470 folC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133210 folC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000071 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002607 folC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002449 folC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003537 folC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002714 folC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001049 folC CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0007423 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002017 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0001722 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0001990 folC CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0002027 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0002740 folC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001405 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0010499 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0001172 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285864 folC CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0005884 folC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063342 folC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001758 folC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001953 folC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000296 folC CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0007834 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144098 folC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003878 folC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006676 folC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000561 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002765 folC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006980 folC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007581 folC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007205 folC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006161 folC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006969 folC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006271 folC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006704 folC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004355 folC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006110 folC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006915 folC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007346 folC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000500 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000499 folC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000611 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007159 folC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005023 folC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006672 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006649 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110415 folC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082211 folC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002917 folC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097543 folC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006913 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004418 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007223 folC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002378 folC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266677 folC CDS
Person Approved Go view Shigella boydii 227 ADV-0002600 folC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008102 folC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005457 folC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002887 folC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073669 folC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088652 folC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002554 folC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002595 folC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002332 folC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001069 VC1001 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000480 folC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005666 folC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002419 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003926 dedC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000657 dedC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003196 folC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002910 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240061 folC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004463 folC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002500 folC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008318 folC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000617 folC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124585 folC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004254 folC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005472 folC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003764 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006305 folC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005525 folC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031290 folC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007351 folC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002618 folC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002384 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005739 folC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005389 folC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002703 folC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003231 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001804 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017395 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002922 folC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2426674 to 2437942
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007617hisJCDScomplement24260062426788Downstream
ABE-0007621argTCDScomplement24270092427791Downstream
ABE-0007628ubiXCDScomplement24280572428626Downstream
ABE-0007631purFCDScomplement24287212430238Downstream
ABE-0007633cvpACDScomplement24302752430763Downstream
ABE-0285510repeat_regionforward24309292431012Downstream
ABE-0007643dedDCDScomplement24310222431684Overlaps Downstream
ABE-0007645folCCDScomplement24316742432942Matches
ABE-0007648accDCDScomplement24330122433926Upstream
ABE-0007653dedACDScomplement24340822434741Upstream
ABE-0007657truACDScomplement24348242435636Upstream
ABE-0007660usgCDScomplement24356362436649Upstream
ABE-0007663pdxBCDScomplement24367152437851Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.