Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007663 (pdxB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007663 showshow history
Names
pdxB JW2317 ECK2314 b2320
Product
erythronate-4-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2436715 2437851 1137 379
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000858
EnteroFam0007663: Trusted threshold=951.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006140 (IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006139 (IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Apr 2008
Automated Process Approved IPR024531 (IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain) Jul 2018
Automated Process Approved IPR020921 (IPR020921 Erythronate-4-phosphate dehydrogenase) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00389 (PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Jul 2018
Automated Process Approved PF02826 (PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF11890 (PF11890 Domain of unknown function (DUF3410)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006139, IPR006140, IPR020921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0033711 4-phosphoerythronate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pdxB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2317 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2314 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2320 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product erythronate-4-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name erythronate-4-phosphate dehydrogenase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name erythronate-4-phosphate dehyrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007663: Trusted threshold=951.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000858
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00389
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02826
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11890 Domain of unknown function (DUF3410) Protein Sequence Similarity - PFAM Model Name: PF11890
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020921 Erythronate-4-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR020921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR024531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.- Published Annotation - Swiss-Prot Accession Number: P05459 Feb 2006
Automated Process Uncurated EC number 1.1.1.290 Published Annotation - Database Name: EC2GO: GO:0033711
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10692 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788660 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007663 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05459 Published Annotation - Swiss-Prot Accession Number: P05459 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05459 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946785 Published Annotation - Entrez Gene Database ID: 946785
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pyridoxine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note erythronate-4-phosphate dehyrogenase; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75380.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006139, IPR006140, IPR020921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0033711 4-phosphoerythronate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000858 pdxB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000972 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000499 pdxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000390 pdxB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000699 pdxB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000411 pdxB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001681 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001356 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003104 pdxB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000978 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003163 pdxB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003879 pdxB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006017 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017790 pdxB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002853 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003803 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303379 pdxB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002607 pdxB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001219 pdxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003207 pdxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005286 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002377 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008898 pdxB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002267 pdxB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002006 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006919 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009172 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009192 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079002 pdxB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002677 pdxB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006599 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005940 pdxB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002607 pdxB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007049 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000689 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006802 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005324 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006767 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006352 pdxB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008301 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005630 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006087 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007019 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007369 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006827 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006249 pdxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007541 pdxB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027294 pdxB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005158 pdxB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007144 pdxB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002892 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002185 pdxB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002396 pdxB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002860 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002779 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002710 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002696 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002670 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002476 pdxB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133215 pdxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000066 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002612 pdxB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002455 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003542 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002719 pdxB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001054 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007429 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002022 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001717 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001995 pdxB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002022 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002745 pdxB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001400 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010504 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001167 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285859 pdxB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005890 pdxB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063347 pdxB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001750 pdxB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001956 pdxB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000301 pdxB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007839 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144108 pdxB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002057 pdxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006681 pdxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000555 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002770 pdxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006985 pdxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007598 pdxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007221 pdxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006156 pdxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006974 pdxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006276 pdxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006709 pdxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004360 pdxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006115 pdxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006920 pdxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007341 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000495 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000494 pdxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000606 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007164 pdxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005018 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006677 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006654 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110428 pdxB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082206 pdxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002922 pdxB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097561 pdxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006908 pdxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004413 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007228 pdxB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002373 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266681 pdxB CDS
Person Approved Go view Shigella boydii 227 ADV-0002605 pdxB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008107 pdxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005452 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002892 pdxB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073674 pdxB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088657 pdxB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002559 pdxB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002600 pdxB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002337 pdxB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002184 VC2108 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000477 pdxB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005673 pdxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002424 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003910 pdxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000662 pdxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003191 pdxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002915 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240071 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004469 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002505 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008323 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000611 pdxB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124566 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004249 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005466 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000597 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006299 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005530 pdxB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031285 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007345 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002623 pdxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002389 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005734 pdxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005384 pdxB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002708 pdxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003236 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001799 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017413 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002917 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20762mutantTn5 InsertionRequest the StrainABE-0007663pdxBpdxB::Tn5KAN-2 at position 835 in Minus orientation ,- pKD460Blattner Laboratory
FB20763mutantTn5 InsertionRequest the StrainABE-0007663pdxBpdxB::Tn5KAN-2 at position 835 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2431715 to 2442851
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007645folCCDScomplement24316742432942Downstream
ABE-0007648accDCDScomplement24330122433926Downstream
ABE-0007653dedACDScomplement24340822434741Downstream
ABE-0007657truACDScomplement24348242435636Downstream
ABE-0007660usgCDScomplement24356362436649Downstream
ABE-0007663pdxBCDScomplement24367152437851Matches
ABE-0007667flkCDSforward24379502438945Upstream
ABE-0007669yfcJCDScomplement24389422440120Upstream
ABE-0285511repeat_regionforward24403432440378Upstream
ABE-0007675fabBCDScomplement24403852441605Upstream
ABE-0007681mnmCCDSforward24417642443770Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.