Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007675 (fabB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007675 showshow history
Names
fabB JW2320 ECK2317 fabC b2323
Product
3-oxoacyl-[acyl-carrier-protein] synthase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2440385 2441605 1221 407
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000859
EnteroFam0007675: Trusted threshold=1156.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000794 (IPR000794 Beta-ketoacyl synthase) Apr 2008
Automated Process Approved IPR014030 (IPR014030 Beta-ketoacyl synthase, N-terminal) Apr 2008
Automated Process Approved IPR014031 (IPR014031 Beta-ketoacyl synthase, C-terminal) Apr 2008
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2018
Automated Process Approved IPR020841 (IPR020841 Polyketide synthase, beta-ketoacyl synthase domain) Jul 2018
Automated Process Approved PF00109 (PF00109 Beta-ketoacyl synthase, N-terminal domain) Jul 2018
Automated Process Approved PF02801 (PF02801 Beta-ketoacyl synthase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fabB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym fabC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2317 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2320 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2323 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-oxoacyl-[acyl-carrier-protein] synthase I Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name Beta-ketoacyl-ACP synthase I Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved alternate product name 3-oxoacyl-[acyl-carrier-protein] synthase I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007675: Trusted threshold=1156.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000859
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000794 Beta-ketoacyl synthase Protein Sequence Similarity - InterPro Domain: IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014030 Beta-ketoacyl synthase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR014030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014031 Beta-ketoacyl synthase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR014031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Protein Sequence Similarity - InterPro Domain: IPR020841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00109 Beta-ketoacyl synthase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02801 Beta-ketoacyl synthase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02801
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.3.1.41 Published Annotation - Swiss-Prot Accession Number: P0A953 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A953 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788663 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A953 Published Annotation - Swiss-Prot Accession Number: P0A953 Jan 2006
Automated Process Approved db xref ASAP:ABE-0007675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946799 Published Annotation - Entrez Gene Database ID: 946799
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10274 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75383.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000859 fabB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000974 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000186 fabB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000147 fabB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001069 fabB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000978 fabB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001679 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001360 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129362 fabB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104812 fabB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104198 fabB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003107 fabB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000975 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003170 fabB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003882 fabB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006008 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017799 fabB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002862 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003806 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303404 fabB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002618 fabB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001212 fabB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003204 fabB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005339 fabB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002380 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008895 fabB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002270 fabB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002003 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006916 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008212 fabB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005628 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079006 fabB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002680 fabB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003080 fabB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008207 fabB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005943 fabB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002610 fabB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007052 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000692 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006805 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005327 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006770 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006355 fabB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008304 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005627 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006090 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007022 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007372 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006824 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006252 fabB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007544 fabB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027297 fabB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005161 fabB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007147 fabB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002895 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002188 fabB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002399 fabB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002864 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002783 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002714 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002699 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002673 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002479 fabB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133218 fabB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000063 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002615 fabB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002464 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003553 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002722 fabB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001057 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007437 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002028 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001711 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002004 fabB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002012 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002755 fabB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001390 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010516 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001156 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285847 fabB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005896 fabB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063350 fabB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001751 fabB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004079 fabB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000307 fabB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007842 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144126 fabB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002254 fabB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006687 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000548 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002778 fabB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006994 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007622 fabB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007242 fabB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006148 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006982 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006284 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006715 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004366 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006121 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006929 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007332 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000487 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000486 fabB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000598 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007173 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005009 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006684 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006661 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110444 fabB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082198 fabB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002931 fabB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097585 fabB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006900 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004407 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007236 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002349 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266682 fabB CDS
Person Approved Go view Shigella boydii 227 ADV-0002608 fabB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008110 fabB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005386 fabB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002895 fabB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073678 fabB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088660 fabB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002562 fabB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002603 fabB CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000584 fabB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005686 fabB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003496 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003841 fabB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000682 fabB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001030 fabB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003522 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240090 fabB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004476 fabB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002512 fabB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008330 fabB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000605 fabB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124537 fabB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004242 fabB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005459 fabB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000591 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006291 fabB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005537 fabB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031279 fabB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007338 fabB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002630 fabB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002396 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005727 fabB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005377 fabB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002714 fabB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003243 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001791 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017423 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002914 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2435385 to 2446605
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007657truACDScomplement24348242435636Downstream
ABE-0007660usgCDScomplement24356362436649Downstream
ABE-0007663pdxBCDScomplement24367152437851Downstream
ABE-0007667flkCDSforward24379502438945Downstream
ABE-0007669yfcJCDScomplement24389422440120Downstream
ABE-0285511repeat_regionforward24403432440378Downstream
ABE-0007675fabBCDScomplement24403852441605Matches
ABE-0007681mnmCCDSforward24417642443770Upstream
ABE-0285512repeat_regionforward24437892443868Upstream
ABE-0007684yfcLCDScomplement24438912444169Upstream
ABE-0007686epmCCDScomplement24442032444751Upstream
ABE-0007689yfcACDScomplement24447512445560Upstream
ABE-0007691mepACDScomplement24455602446384Upstream
ABE-0007693aroCCDScomplement24463882447473Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.