Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007693 (aroC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007693 showshow history
Names
aroC JW2326 ECK2323 b2329
Product
chorismate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2446388 2447473 1086 362
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000864
EnteroFam0007693: Trusted threshold=1049.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000453 (IPR000453 Chorismate synthase) Apr 2008
Automated Process Approved IPR035904 (IPR035904 Chorismate synthase AroC superfamily) Jul 2018
Automated Process Approved PF01264 (PF01264 Chorismate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000453
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004107 chorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000453
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aroC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2326 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2323 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2329 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product chorismate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name chorismate synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007693: Trusted threshold=1049.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000864
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR035904 Chorismate synthase AroC superfamily Protein Sequence Similarity - InterPro Domain: IPR035904
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01264 Chorismate synthase Protein Sequence Similarity - PFAM Model Name: PF01264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000453 Chorismate synthase Protein Sequence Similarity - InterPro Domain: IPR000453
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.3.5 Published Annotation - Swiss-Prot Accession Number: P12008 Feb 2006
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788669 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P12008 Published Annotation - Swiss-Prot Accession Number: P12008 Jan 2005
Automated Process Approved db xref GeneID:946814 Published Annotation - Entrez Gene Database ID: 946814
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12008 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007693 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10075 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75389.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000453
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004107 chorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000453
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000864 aroC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000979 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000215 aroC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000251 aroC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000682 aroC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000829 aroC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001669 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001366 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129367 aroC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104817 aroC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104204 aroC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003113 aroC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000969 aroC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003190 aroC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003888 aroC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005993 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015408 aroC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002876 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003812 aroC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303421 aroC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002624 aroC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001206 aroC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003198 aroC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005345 aroC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002386 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008889 aroC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002276 aroC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001997 aroC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006908 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008980 aroC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005621 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079012 aroC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002686 aroC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003086 aroC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008213 aroC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005950 aroC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002616 aroC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007058 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000698 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006811 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005333 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006777 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006361 aroC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008310 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005621 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006096 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007028 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007378 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006818 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006258 aroC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007550 aroC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027303 aroC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005167 aroC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007154 aroC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002901 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002194 aroC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002405 aroC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002870 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002789 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002720 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002705 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176867 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002679 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002485 aroC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133224 aroC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000057 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002621 aroC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002470 aroC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003565 aroC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002728 aroC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001063 aroC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007447 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002034 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001705 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002010 aroC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002006 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002761 aroC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001384 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010522 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001150 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285841 aroC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005902 aroC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063356 aroC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001756 aroC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000313 aroC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007849 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144137 aroC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002081 aroC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006693 aroC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000542 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002784 aroC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007000 aroC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007643 aroC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007261 aroC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006142 aroC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006988 aroC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006290 aroC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006721 aroC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004372 aroC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006127 aroC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006935 aroC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007326 aroC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000481 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000480 aroC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000592 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007179 aroC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005003 aroC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006690 aroC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006667 aroC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110455 aroC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082192 aroC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002937 aroC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097602 aroC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006894 aroC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004401 aroC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007242 aroC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002342 aroC CDS
Person Approved Go view Shigella boydii 227 ADV-0002614 aroC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008116 aroC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005380 aroC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002901 aroC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073685 aroC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088666 aroC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002568 aroC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002609 aroC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002192 VC2116 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000585 aroC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005700 aroC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003439 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003825 aroC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000688 aroC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001036 aroC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003102 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240103 aroC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004482 aroC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002519 aroC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008336 aroC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000599 aroC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124519 aroC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004236 aroC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005453 aroC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001608 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006285 aroC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005543 aroC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031273 aroC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007332 aroC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002637 aroC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002403 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005721 aroC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005371 aroC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002720 aroC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003250 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001784 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017458 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002903 aroC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20766mutantTn5 InsertionRequest the StrainABE-0007693aroCaroC::Tn5KAN-2 at position 619 in Plus orientation ,+ pKD460Blattner Laboratory
FB20767mutantTn5 InsertionRequest the StrainABE-0007693aroCaroC::Tn5KAN-2 at position 619 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2441388 to 2452473
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007675fabBCDScomplement24403852441605Downstream
ABE-0007681mnmCCDSforward24417642443770Downstream
ABE-0285512repeat_regionforward24437892443868Downstream
ABE-0007684yfcLCDScomplement24438912444169Downstream
ABE-0007686epmCCDScomplement24442032444751Downstream
ABE-0007689yfcACDScomplement24447512445560Downstream
ABE-0007691mepACDScomplement24455602446384Downstream
ABE-0007693aroCCDScomplement24463882447473Matches
ABE-0007695prmBCDScomplement24475082448440Upstream
ABE-0007698smrBCDSforward24486062449157Upstream
ABE-0007700yfcOCDScomplement24492282450049Upstream
ABE-0007702yfcPCDScomplement24500512450590Upstream
ABE-0007705yfcQCDScomplement24505872451075Upstream
ABE-0007707yfcRCDScomplement24510722451584Upstream
ABE-0007709yfcSCDScomplement24515842452336Upstream
ABE-0007711yfcU_2CDSpcomplement24523562453252Upstream
ABE-0285125yfcUpseudogenecomplement24523562455001Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.