Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007723 (fadJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007723 showshow history
Names
fadJ JW2338 ECK2335 yfcX b2341
Product
enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2457015 2459159 2145 715
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012802 (IPR012802 Fatty oxidation complex, alpha subunit FadJ) Apr 2008
Automated Process Approved IPR006108 (IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR006176 (IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding) Apr 2008
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR006180 (IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site) Apr 2008
Automated Process Approved IPR029045 (IPR029045 ClpP/crotonase-like domain superfamily) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02737 (PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF00378 (PF00378 Enoyl-CoA hydratase/isomerase) Jul 2018
Automated Process Approved PF00725 (PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006176, IPR006108, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006635 fatty acid beta-oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019395 fatty acid oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Oct 2006
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadJ Published Annotation - PubMed ID: 12535077
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym yfcX Published Annotation - Swiss-Prot Accession Number: P77399 Aug 2002
Person Approved synonym ECK2335 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2338 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2341 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase Experimental - PubMed ID: 12270828
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name bifunctional fatty acid oxidation complex protein: putative enoyl-CoA hydratase/isomerase (N-terminal); putative NAD(P)-binding dehydrogenase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR012802 Fatty oxidation complex, alpha subunit FadJ Protein Sequence Similarity - InterPro Domain: IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Protein Sequence Similarity - InterPro Domain: IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02737
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00378 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - PFAM Model Name: PF00378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00725
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029045 ClpP/crotonase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006180
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.2.3 Published Annotation - Swiss-Prot Accession Number: P77399 Feb 2006
Automated Process Approved EC number 5.3.3.8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.2.1.17 Published Annotation - Swiss-Prot Accession Number: P77399 Feb 2006
Person Approved EC number 1.1.1.35 Published Annotation - Swiss-Prot Accession Number: P77399 Feb 2006
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949097 Published Annotation - Entrez Gene Database ID: 949097
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG14127 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77399 Published Annotation - Swiss-Prot Accession Number: P77399 Jan 2005
Automated Process Approved db xref ASAP:ABE-0007723 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77399 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788682 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated molecular interaction Interacts with the product of yfcY ASAP:7725:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note putative enzyme; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75401.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006176, IPR006108, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0019395 fatty acid oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Oct 2006
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006635 fatty acid beta-oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000983 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001208 fadJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001357 fadJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002022 fadJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001568 fadJ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003117 fadJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000963 fadJ CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003194 fadJ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003892 fadJ_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005989 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015399 fadJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002880 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003817 fadJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303433 fadJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002628 fadJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001202 fadJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003184 fadJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005357 fadJ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002397 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008878 fadJ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002286 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001985 fadJ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006890 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008223 fadJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005609 FadJ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079023 fadJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002697 fadJ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003098 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008225 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005962 fadJ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002627 fadJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007071 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000711 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006826 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005347 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006791 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006374 fadJ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008324 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005607 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006110 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007043 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007392 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006806 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006272 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007563 fadJ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027314 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008973 fadJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007165 fadJ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002912 fadJ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002206 fadJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002417 fadJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002881 fadJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002800 fadJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002731 fadJ CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002716 fadJ CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176878 fadJ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002691 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002499 fadJ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133235 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000045 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002632 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002475 fadJ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002732 yfcX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001067 fadJ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007451 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002038 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001701 fadJ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002016 fadJ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002001 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002766 fadJ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001379 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010526 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001146 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285836 fadJ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005907 fadJ CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063365 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004060 fadJ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004085 fadJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000321 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007863 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006697 fadJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000537 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002790 yfcX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007005 fadJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007656 yfcX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007273 yfcX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006138 fadJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006992 fadJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006294 fadJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006725 fadJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004376 fadJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006131 fadJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006939 fadJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007322 fadJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000477 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000476 yfcX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000585 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007183 fadJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004999 fadJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006694 fadJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006671 fadJ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110466 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082188 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002941 fadJ CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097615 fadJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006890 fadJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004397 fadJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007246 fadJ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002338 fadJ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266698 CDS
Person Approved Go view Shigella boydii 227 ADV-0002628 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008130 fadJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005368 fadJ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002916 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073701 CDS
Person Approved Go view Shigella flexneri 301 ABT-0088678 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002579 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002619 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001115 VC1047 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005723 fadJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001758 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003813 faoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000693 fadJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001040 fadJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001107 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240113 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004487 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002523 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008343 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000595 fadJ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124509 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004229 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005448 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001603 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006279 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005549 fadJ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031268 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007327 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002641 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002407 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005714 fadJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005366 fadJ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002724 fadJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003256 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001779 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017474 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002899 fadJ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22619mutantTn5 InsertionRequest the StrainABE-0007723fadJb2341::Tn5KAN-I-SceI at position 52 in Plus orientation ,+ pKD465Blattner Laboratory
FB23434mutantTn5 InsertionRequest the StrainABE-0007723fadJb2341::Tn5KAN-I-SceI at position 52 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2452015 to 2464159
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007709yfcSCDScomplement24515842452336Downstream
ABE-0007711yfcU_2CDSpcomplement24523562453252Downstream
ABE-0285125yfcUpseudogenecomplement24523562455001Downstream
ABE-0007713yfcU_1CDSpcomplement24532652455001Downstream
ABE-0007715yfcVCDScomplement24550832455646Downstream
ABE-0007720sixACDScomplement24563272456812Downstream
ABE-0007723fadJCDScomplement24570152459159Matches
ABE-0007725fadICDScomplement24591592460469Overlaps Upstream
ABE-0007731yfcZCDScomplement24606502460934Upstream
ABE-0007740fadLCDSforward24613062462646Upstream
ABE-0007743yfdFCDSforward24630122464070Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.